{
    "type": "genome",
    "identifier": "GCF_001403875.1",
    "organism": "Paenibacillus ihumii",
    "title": "Paenibacillus ihumii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001403875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3556921",
        "wgs_master": "CYXK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "687436",
        "species_taxid": "687436",
        "organism_name": "Paenibacillus ihumii",
        "infraspecific_name": "strain=AT5",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/10/08",
        "asm_name": "Paenibacillus ihumii",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_001403875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/403/875/GCF_001403875.1_Paenibacillus_ihumii",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5924107",
        "genome_size_ungapped": "5923785",
        "gc_percent": "50.000000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001403875.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "5266",
        "protein_coding_gene_count": "5081",
        "non_coding_gene_count": "90",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-10-08",
    "dateModified": "2015-10-08",
    "datePublished": "2015-10-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus ihumii"
        ],
        "sample_taxid": [
            "687436"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.680 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5924107",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "4112046",
        "N50 (bp)": "4112046",
        "Gap Ratio (%)": "0.005486",
        "GCcontent (%)": "50.2",
        "Number of CDSs": "5220",
        "Average Protein Length": "320.6",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "12",
        "Number of tRNAs": "67",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenibacillus ihumii",
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            },
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                "species_taxid": 1870990,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "relation_to_type": "type",
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            },
            {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus macerans",
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                "species_taxid": 44252,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus oralis",
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                "accession": "GCA_003863965.1",
                "taxid": 2490856,
                "species_taxid": 2490856,
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                "matched_fragments": 428,
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            },
            {
                "organism_name": "Paenibacillus timonensis",
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                "taxid": 225915,
                "species_taxid": 225915,
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                "ani": 78.2049,
                "matched_fragments": 360,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus rubinfantis",
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            },
            {
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                "species_taxid": 2079532,
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                "validated": true,
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                "matched_fragments": 123,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus aceti",
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                "species_taxid": 1820010,
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                "ani": 77.8029,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus brevis",
                "strain": "strain=MSJ-6",
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                "taxid": 2841508,
                "species_taxid": 2841508,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus tuaregi",
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                "accession": "GCA_900086655.1",
                "taxid": 1816681,
                "species_taxid": 1816681,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 236,
                "total_fragments": 1968,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus agri",
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                "accession": "GCA_013359945.1",
                "taxid": 2744309,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus rhizophilus",
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                "accession": "GCA_003854965.1",
                "taxid": 1850366,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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        "gtdb_result": [
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                "accession": "GCF_001403875.1",
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                "total_fragments": 1968,
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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            },
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            },
            {
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            },
            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}