{ "type": "genome", "identifier": "GCF_001404155.1", "organism": "Nereida ignava", "title": "Nereida ignava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001404155.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3312982", "wgs_master": "CVQV00000000.1", "refseq_category": "na", "taxid": "282199", "species_taxid": "282199", "organism_name": "Nereida ignava", "infraspecific_name": "strain=CECT 5292", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/30", "asm_name": "N.ignavaCECT5292_PROKKA", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_001404155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/404/155/GCF_001404155.1_N.ignavaCECT5292_PROKKA", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2888349", "genome_size_ungapped": "2888349", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "69", "contig_count": "69", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001404155.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "2917", "protein_coding_gene_count": "2819", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-30", "dateModified": "2015-06-30", "datePublished": "2015-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Nereida ignava" ], "sample_taxid": [ "282199" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mediterranean Sea" ], "sample_host_location_id": [], "data_size": "0.821 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2888349", "Number of Sequences": "69", "Longest Sequences (bp)": "474497", "N50 (bp)": "164399", "Gap Ratio (%)": "0.001004", "GCcontent (%)": "54.0", "Number of CDSs": "2822", "Average Protein Length": "303.5", "Coding Ratio (%)": "88.9", "Number of rRNAs": "5", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nereida ignava", "strain": "strain=CECT 5292", "accession": "GCA_001404155.1", "taxid": 282199, "species_taxid": 282199, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 925, "total_fragments": 929, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nereida ignava", "strain": "strain=CECT 5292", "accession": "GCA_001049735.1", "taxid": 282199, "species_taxid": 282199, "relation_to_type": "type", "validated": true, "ani": 99.9998, "matched_fragments": 925, "total_fragments": 929, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nereida ignava", "strain": "strain=DSM 16309", "accession": "GCA_900114125.1", "taxid": 282199, "species_taxid": 282199, "relation_to_type": "type", "validated": true, "ani": 99.976, "matched_fragments": 912, "total_fragments": 929, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thalassobacter stenotrophicus", "strain": "strain=DSM 16310", "accession": "GCA_900141945.1", "taxid": 266809, "species_taxid": 266809, "relation_to_type": "type", "validated": true, "ani": 82.1295, "matched_fragments": 133, "total_fragments": 929, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobacter stenotrophicus", "strain": "strain=CECT 5294", "accession": "GCA_001458315.1", 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2715756, "relation_to_type": "type", "validated": true, "ani": 77.3277, "matched_fragments": 72, "total_fragments": 929, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia maritima", "strain": "strain=DSM 101533", "accession": "GCA_003003285.1", "taxid": 1435347, "species_taxid": 1435347, "relation_to_type": "type", "validated": true, "ani": 77.1039, "matched_fragments": 100, "total_fragments": 929, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=DSM 101063", "accession": "GCA_013407805.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 77.0083, "matched_fragments": 98, "total_fragments": 929, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Poseidonocella pacifica", "strain": "strain=DSM 29316", "accession": "GCA_900111875.1", "taxid": 871651, "species_taxid": 871651, "relation_to_type": "type", "validated": true, "ani": 76.9049, "matched_fragments": 51, "total_fragments": 929, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 76.8992, "matched_fragments": 93, "total_fragments": 929, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoprimorskyibacter insulae", "strain": "strain=CECT 8871", "accession": "GCA_900302505.1", "taxid": 1695997, "species_taxid": 1695997, "relation_to_type": "type", "validated": true, "ani": 76.6044, "matched_fragments": 88, "total_fragments": 929, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia tamlensis", "strain": "strain=DSM 26879", "accession": "GCA_900115105.1", "taxid": 390270, "species_taxid": 390270, "relation_to_type": "type", "validated": true, "ani": 76.5987, "matched_fragments": 121, "total_fragments": 929, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola sediminis", "strain": "strain=DRYC-M-16", "accession": "GCA_004745575.1", "taxid": 2486418, "species_taxid": 2486418, "relation_to_type": "type", "validated": true, "ani": 76.1397, "matched_fragments": 50, "total_fragments": 929, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita hallyeonensis", "strain": "strain=DSM 29431", "accession": "GCA_900129875.1", "taxid": 996342, "species_taxid": 996342, "relation_to_type": "type", "validated": true, "ani": 76.1202, "matched_fragments": 60, "total_fragments": 929, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 75.6964, "matched_fragments": 59, "total_fragments": 929, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001049735.1", "gtdb_species": "s__Nereida ignava", "ani": 99.9998, "matched_fragments": 925, "total_fragments": 929, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Nereida", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_001458315.1", "gtdb_species": "s__Thalassobacter stenotrophicus", "ani": 82.1417, "matched_fragments": 135, "total_fragments": 929, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thalassobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": 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