{ "type": "genome", "identifier": "GCF_001407835.1", "organism": "Lagierella massiliensis", "title": "Lagierella massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001407835.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3546014", "wgs_master": "CYUO00000000.1", "refseq_category": "reference genome", "taxid": "1689303", "species_taxid": "1689303", "organism_name": "Lagierella massiliensis", "infraspecific_name": "strain=SIT14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/11", "asm_name": "Lagierella massiliensis", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_001407835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/407/835/GCF_001407835.1_Lagierella_massiliensis", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1832315", "genome_size_ungapped": "1832315", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001407835.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "1771", "protein_coding_gene_count": "1696", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-11", "dateModified": "2015-10-11", "datePublished": "2015-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Lagierella massiliensis" ], "sample_taxid": [ "1689303" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.504 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1832315", "Number of Sequences": "5", "Longest Sequences (bp)": "1068061", "N50 (bp)": "1068061", "Gap Ratio (%)": "0.000109", "GCcontent (%)": "32.5", "Number of CDSs": "1734", "Average Protein Length": "318.3", "Coding Ratio (%)": "90.4", "Number of rRNAs": "5", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lagierella massiliensis", "strain": "strain=Marseille-P2012", "accession": "GCA_902375645.1", "taxid": 1689303, "species_taxid": 1689303, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 603, "total_fragments": 609, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lagierella massiliensis", "strain": "strain=SIT14", "accession": "GCA_001407835.1", "taxid": 1689303, "species_taxid": 1689303, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 605, "total_fragments": 609, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Finegoldia magna", "strain": "strain=FDAARGOS_1593", "accession": "GCA_020731325.1", "taxid": 1260, "species_taxid": 1260, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5064, "matched_fragments": 63, "total_fragments": 609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Finegoldia magna", "strain": "strain=DSM 20470", "accession": "GCA_003182075.1", "taxid": 1260, "species_taxid": 1260, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7032, "matched_fragments": 57, "total_fragments": 609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Miniphocaeibacter halophilus", "strain": "strain=AMB_01", "accession": "GCA_016458825.1", "taxid": 2931922, "species_taxid": 2931922, "relation_to_type": "type", "validated": true, "ani": 77.751, "matched_fragments": 77, "total_fragments": 609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Miniphocaeibacter massiliensis", "strain": "strain=Marseille-P4678", "accession": "GCA_900232905.1", "taxid": 2041841, "species_taxid": 2041841, "relation_to_type": "type", "validated": true, "ani": 77.0732, "matched_fragments": 69, "total_fragments": 609, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001407835.1", "gtdb_species": "s__Lagierella massiliensis", "ani": 100.0, "matched_fragments": 607, "total_fragments": 609, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Lagierella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000159695.1", "gtdb_species": "s__Finegoldia magna_F", "ani": 79.2788, "matched_fragments": 67, "total_fragments": 609, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.41", "min_intra_species_ani": "95.07", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_910589545.1", "gtdb_species": "s__Finegoldia sp910589545", "ani": 78.4697, "matched_fragments": 55, "total_fragments": 609, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016458825.1", "gtdb_species": "s__Miniphocibacter sp016458825", "ani": 77.8503, "matched_fragments": 77, "total_fragments": 609, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Miniphocibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900766215.1", "gtdb_species": "s__Finegoldia sp900766215", "ani": 77.3839, "matched_fragments": 51, "total_fragments": 609, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900232905.1", "gtdb_species": "s__Miniphocibacter massiliensis", "ani": 77.0681, "matched_fragments": 70, "total_fragments": 609, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Miniphocibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012841535.1", "gtdb_species": "s__Miniphocibacter sp012841535", "ani": 76.8464, "matched_fragments": 79, "total_fragments": 609, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Miniphocibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": 1831366.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Lagierella", "massiliensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }