{
    "type": "genome",
    "identifier": "GCF_001412105.1",
    "organism": "Corynebacterium oculi",
    "title": "Corynebacterium oculi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Public Health Agency of Canada",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001412105.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04091236",
        "wgs_master": "LKST00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1544416",
        "species_taxid": "1544416",
        "organism_name": "Corynebacterium oculi",
        "infraspecific_name": "strain=NML 130210",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/10/23",
        "asm_name": "ASM141210v1",
        "asm_submitter": "Public Health Agency of Canada",
        "gbrs_paired_asm": "GCA_001412105.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/412/105/GCF_001412105.1_ASM141210v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2413873",
        "genome_size_ungapped": "2413873",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001412105.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "2375",
        "protein_coding_gene_count": "2268",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-10-23",
    "dateModified": "2015-10-23",
    "datePublished": "2015-10-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium oculi"
        ],
        "sample_taxid": [
            "1544416"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "n/a"
        ],
        "sample_host_location_id": [],
        "data_size": "0.670 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2413873",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "826293",
        "N50 (bp)": "721185",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.8",
        "Number of CDSs": "2371",
        "Average Protein Length": "305.7",
        "Coding Ratio (%)": "90.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Corynebacterium oculi",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 803,
                "total_fragments": 803,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Corynebacterium mastitidis",
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                "accession": "GCA_000375365.1",
                "taxid": 161890,
                "species_taxid": 161890,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium lowii",
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                "accession": "GCA_001412085.1",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Corynebacterium uberis",
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                "matched_fragments": 307,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "species_taxid": 225326,
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                "validated": true,
                "ani": 78.3364,
                "matched_fragments": 269,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium frankenforstense",
                "strain": "strain=ST18",
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                "species_taxid": 1230998,
                "relation_to_type": "type",
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                "ani": 78.2885,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium halotolerans",
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                "matched_fragments": 265,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Corynebacterium humireducens",
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            },
            {
                "organism_name": "Corynebacterium vitaeruminis",
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                "accession": "GCA_000550805.1",
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                "species_taxid": 38305,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1731,
                "matched_fragments": 238,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium humireducens",
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                "accession": "GCA_001571025.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1224,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium occultum",
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                "accession": "GCA_009734425.1",
                "taxid": 2675219,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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        "gtdb_result": [
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                "accession": "GCF_001412105.1",
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                "matched_fragments": 803,
                "total_fragments": 803,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
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                "mean_intra_species_ani": "N/A",
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    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}