{ "type": "genome", "identifier": "GCF_001414055.1", "organism": "Caulobacter henricii", "title": "Caulobacter henricii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "university of south carolina", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001414055.1", "bioproject": "PRJNA224116", "biosample": "SAMN04208552", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "69395", "species_taxid": "69395", "organism_name": "Caulobacter henricii", "infraspecific_name": "strain=CB4", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/26", "asm_name": "ASM141405v1", "asm_submitter": "university of south carolina", "gbrs_paired_asm": "GCA_001414055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/414/055/GCF_001414055.1_ASM141405v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3957288", "genome_size_ungapped": "3957288", "gc_percent": "66.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "3792", "protein_coding_gene_count": "3681", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-26", "dateModified": "2015-10-26", "datePublished": "2015-10-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Caulobacter henricii" ], "sample_taxid": [ "69395" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: California" ], "sample_host_location_id": [], "data_size": "1.087 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3957288", "Number of Sequences": "2", "Longest Sequences (bp)": "3864204", "N50 (bp)": "3864204", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.8", "Number of CDSs": "3749", "Average Protein Length": "315.4", "Coding Ratio (%)": "89.6", "Number of rRNAs": "6", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Caulobacter henricii", "strain": "strain=CB4", "accession": "GCA_001414055.1", "taxid": 69395, "species_taxid": 69395, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1319, "total_fragments": 1319, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Caulobacter soli", "strain": "strain=Ji-3-8", "accession": "GCA_011045195.1", "taxid": 2708539, "species_taxid": 2708539, "relation_to_type": "type", "validated": true, "ani": 82.9927, "matched_fragments": 828, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=KCTC 52515", "accession": "GCA_010977555.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 82.7479, "matched_fragments": 854, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=CGMCC 1.15915", "accession": "GCA_014645055.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 82.7178, "matched_fragments": 833, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter hibisci", "strain": "strain=KACC 18849", "accession": "GCA_016135805.1", "taxid": 2035993, "species_taxid": 2035993, "relation_to_type": "type", "validated": true, "ani": 82.6267, "matched_fragments": 814, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter vibrioides", "strain": "strain=DSM 9893", "accession": "GCA_002858865.1", "taxid": 155892, "species_taxid": 155892, "relation_to_type": "type", "validated": true, "ani": 82.6026, "matched_fragments": 850, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter segnis", "strain": "strain=ATCC 21756", "accession": "GCA_000092285.1", "taxid": 88688, "species_taxid": 88688, "relation_to_type": "type", "validated": true, "ani": 82.4195, "matched_fragments": 819, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter segnis", "strain": "strain=TK0059", "accession": "GCA_003015125.1", "taxid": 88688, "species_taxid": 88688, "relation_to_type": "type", "validated": true, "ani": 82.3751, "matched_fragments": 819, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter flavus", "strain": "strain=RHGG3", "accession": "GCA_003722335.1", "taxid": 1679497, "species_taxid": 1679497, "relation_to_type": "type", "validated": true, "ani": 82.226, "matched_fragments": 834, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter flavus", "strain": "strain=CGMCC1 15093", "accession": "GCA_002858845.1", "taxid": 1679497, "species_taxid": 1679497, "relation_to_type": "type", "validated": true, "ani": 82.177, "matched_fragments": 821, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter endophyticus", "strain": "strain=774", "accession": "GCA_003116815.1", "taxid": 2172652, "species_taxid": 2172652, "relation_to_type": "type", "validated": true, "ani": 82.1323, "matched_fragments": 804, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter radicis", "strain": "strain=695", "accession": "GCA_003094615.1", "taxid": 2172650, "species_taxid": 2172650, "relation_to_type": "type", "validated": true, "ani": 82.1219, "matched_fragments": 842, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 1763816, "species_taxid": 1763816, "relation_to_type": "type", "validated": true, "ani": 79.0373, "matched_fragments": 559, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium glaciei", "strain": "strain=20VBR1", "accession": "GCA_016772415.2", "taxid": 2803784, "species_taxid": 2803784, "relation_to_type": "type", "validated": true, "ani": 78.8809, "matched_fragments": 505, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 76.0015, "matched_fragments": 188, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 75.9893, "matched_fragments": 160, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001414055.1", "gtdb_species": "s__Caulobacter henricii", "ani": 100.0, "matched_fragments": 1318, "total_fragments": 1319, 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