{ "type": "genome", "identifier": "GCF_001418005.1", "organism": "Chelatococcus sambhunathii", "title": "Chelatococcus sambhunathii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001418005.1", "bioproject": "PRJNA224116", "biosample": "SAMN03840667", "wgs_master": "LIOL00000000.1", "refseq_category": "reference genome", "taxid": "363953", "species_taxid": "363953", "organism_name": "Chelatococcus sambhunathii", "infraspecific_name": "strain=DSM 18167", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/28", "asm_name": "ASM141800v1", "asm_submitter": "Joint Genome Institute", "gbrs_paired_asm": "GCA_001418005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/418/005/GCF_001418005.1_ASM141800v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4373820", "genome_size_ungapped": "4372431", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001418005.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "4207", "protein_coding_gene_count": "4115", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-28", "dateModified": "2015-10-28", "datePublished": "2015-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Chelatococcus sambhunathii" ], "sample_taxid": [ "363953" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Orissa" ], "sample_host_location_id": [], "data_size": "1.192 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4373820", "Number of Sequences": "35", "Longest Sequences (bp)": "742075", "N50 (bp)": "426134", "Gap Ratio (%)": "0.031757", "GCcontent (%)": "67.8", "Number of CDSs": "4185", "Average Protein Length": "312.3", "Coding Ratio (%)": "89.7", "Number of rRNAs": "4", "Number of tRNAs": "55", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chelatococcus sambhunathii", "strain": "strain=DSM 18167", "accession": "GCA_001517345.1", "taxid": 363953, "species_taxid": 363953, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1441, 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"organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 78.1004, "matched_fragments": 519, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 78.0954, "matched_fragments": 528, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 77.9719, "matched_fragments": 550, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001418005.1", "gtdb_species": "s__Chelatococcus_A sambhunathii", "ani": 100.0, "matched_fragments": 1441, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Chelatococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_014196925.1", "gtdb_species": "s__Chelatococcus_A caeni", "ani": 94.1154, "matched_fragments": 1262, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Chelatococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.96", 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"doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 39.5, "optimum_ph": 7.75, "genome_size": 4373820.0, "gc_content": 67.926, "coding_genes": 3738.5, "rRNA16S_genes": 2.0, "tRNA_genes": 48.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chelatococcus", "sambhunathii" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }