{ "type": "genome", "identifier": "GCF_001418015.1", "organism": "Lacinutrix mariniflava", "title": "Lacinutrix mariniflava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KORIA POLAR RESEARCH INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001418015.1", "bioproject": "PRJNA224116", "biosample": "SAMN04002510", "wgs_master": "LIQG00000000.1", "refseq_category": "reference genome", "taxid": "342955", "species_taxid": "342955", "organism_name": "Lacinutrix mariniflava", "infraspecific_name": "strain=AKS432", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/28", "asm_name": "ASM141801v1", "asm_submitter": "KORIA POLAR RESEARCH INSTITUTE", "gbrs_paired_asm": "GCA_001418015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/418/015/GCF_001418015.1_ASM141801v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3973985", "genome_size_ungapped": "3973985", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001418015.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3566", "protein_coding_gene_count": "3492", "non_coding_gene_count": "57", "pubmed_id": "26882010" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-28", "dateModified": "2015-10-28", "datePublished": "2015-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Lacinutrix mariniflava" ], "sample_taxid": [ "342955" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: King George Island" ], "sample_host_location_id": [], "data_size": "1.094 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3973985", "Number of Sequences": "32", "Longest Sequences (bp)": "1246178", "N50 (bp)": "374262", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.8", "Number of CDSs": "3509", "Average Protein Length": "333.3", "Coding Ratio (%)": "88.3", "Number of rRNAs": "6", "Number of tRNAs": "38", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lacinutrix mariniflava", "strain": "strain=AKS432", "accession": "GCA_001418015.1", "taxid": 342955, "species_taxid": 342955, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1310, "total_fragments": 1313, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lacinutrix algicola", "strain": "strain=AKS293", "accession": "GCA_001418085.1", "taxid": 342954, "species_taxid": 342954, "relation_to_type": "type", "validated": true, "ani": 87.1765, "matched_fragments": 946, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix jangbogonensis", "strain": "strain=PAMC 27137", "accession": "GCA_000797445.1", "taxid": 1469557, "species_taxid": 1469557, "relation_to_type": "type", "validated": true, "ani": 82.5694, "matched_fragments": 747, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix himadriensis", "strain": "strain=E4-9a", "accession": "GCA_001418105.1", "taxid": 641549, "species_taxid": 641549, "relation_to_type": "type", "validated": true, "ani": 79.4239, "matched_fragments": 530, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya namhaensis", "strain": "strain=DSM 28881", "accession": "GCA_900114005.1", "taxid": 1144750, "species_taxid": 1144750, "relation_to_type": "type", "validated": true, "ani": 79.2509, "matched_fragments": 517, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya marilimosa", "strain": "strain=CAM030", "accession": "GCA_000518485.1", "taxid": 272164, "species_taxid": 272164, "relation_to_type": "type", "validated": true, "ani": 79.0872, "matched_fragments": 476, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 78.3662, "matched_fragments": 390, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella psychrotolerans", "strain": "strain=RS-3", "accession": "GCA_000427335.1", "taxid": 1344585, "species_taxid": 1344585, "relation_to_type": "type", "validated": true, "ani": 78.1428, "matched_fragments": 356, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=KCTC 42117", "accession": "GCA_003008435.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 78.137, "matched_fragments": 409, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.0323, "matched_fragments": 368, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella eckloniae", "strain": "strain=EC29", "accession": "GCA_013249045.1", "taxid": 1089306, "species_taxid": 1089306, "relation_to_type": "type", "validated": true, "ani": 78.0173, "matched_fragments": 315, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.9818, "matched_fragments": 369, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia paragorgiae", "strain": "strain=DSM 23842", "accession": "GCA_900107625.1", "taxid": 283786, "species_taxid": 283786, "relation_to_type": "type", "validated": true, "ani": 77.9474, "matched_fragments": 339, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 77.8506, "matched_fragments": 283, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 77.7899, "matched_fragments": 240, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 77.3771, "matched_fragments": 234, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.2552, "matched_fragments": 250, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 77.176, "matched_fragments": 172, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.1054, "matched_fragments": 252, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Joostella atrarenae", "strain": "strain=M1-2", "accession": "GCA_021764745.1", "taxid": 679257, "species_taxid": 679257, "relation_to_type": 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002831665.1", "gtdb_species": "s__Lacinutrix sp002831665", "ani": 86.1371, "matched_fragments": 925, "total_fragments": 1313, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000797445.1", "gtdb_species": "s__Lacinutrix jangbogonensis", "ani": 82.5682, "matched_fragments": 746, "total_fragments": 1313, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.041, "doubling_h": null, "growth_tmp": 25.0, "optimum_tmp": 17.5, "optimum_ph": 6.5, "genome_size": 3971385.0, "gc_content": 31.78, "coding_genes": 2803.0, "rRNA16S_genes": 2.0, "tRNA_genes": 36.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lacinutrix", "mariniflava" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }