{ "type": "genome", "identifier": "GCF_001418085.1", "organism": "Lacinutrix algicola", "title": "Lacinutrix algicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KORIA POLAR RESEARCH INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001418085.1", "bioproject": "PRJNA224116", "biosample": "SAMN04002512", "wgs_master": "LIQH00000000.1", "refseq_category": "reference genome", "taxid": "342954", "species_taxid": "342954", "organism_name": "Lacinutrix algicola", "infraspecific_name": "strain=AKS293", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/28", "asm_name": "ASM141808v1", "asm_submitter": "KORIA POLAR RESEARCH INSTITUTE", "gbrs_paired_asm": "GCA_001418085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/418/085/GCF_001418085.1_ASM141808v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3661347", "genome_size_ungapped": "3661347", "gc_percent": "31.500000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001418085.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3360", "protein_coding_gene_count": "3270", "non_coding_gene_count": "55", "pubmed_id": "26882010" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-28", "dateModified": "2015-10-28", "datePublished": "2015-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Lacinutrix algicola" ], "sample_taxid": [ "342954" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: King George Island" ], "sample_host_location_id": [], "data_size": "1.006 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3661347", "Number of Sequences": "46", "Longest Sequences (bp)": "449564", "N50 (bp)": "204393", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.4", "Number of CDSs": "3290", "Average Protein Length": "328.5", "Coding Ratio (%)": "88.6", "Number of rRNAs": "5", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lacinutrix algicola", "strain": "strain=AKS293", "accession": "GCA_001418085.1", "taxid": 342954, "species_taxid": 342954, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1193, "total_fragments": 1199, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lacinutrix mariniflava", "strain": "strain=AKS432", "accession": "GCA_001418015.1", "taxid": 342955, "species_taxid": 342955, "relation_to_type": "type", "validated": true, "ani": 87.3108, "matched_fragments": 954, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix jangbogonensis", "strain": "strain=PAMC 27137", "accession": "GCA_000797445.1", "taxid": 1469557, "species_taxid": 1469557, "relation_to_type": "type", "validated": true, "ani": 82.247, "matched_fragments": 743, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya namhaensis", "strain": "strain=DSM 28881", "accession": "GCA_900114005.1", "taxid": 1144750, "species_taxid": 1144750, "relation_to_type": "type", "validated": true, "ani": 79.8449, "matched_fragments": 520, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix himadriensis", "strain": "strain=E4-9a", "accession": "GCA_001418105.1", "taxid": 641549, "species_taxid": 641549, "relation_to_type": "type", "validated": true, "ani": 79.7646, "matched_fragments": 548, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya aquimaris", "strain": "strain=DSM 24464", "accession": "GCA_003259525.1", "taxid": 639310, "species_taxid": 639310, "relation_to_type": "type", "validated": true, "ani": 78.6894, "matched_fragments": 424, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella psychrotolerans", "strain": "strain=RS-3", "accession": "GCA_000427335.1", "taxid": 1344585, "species_taxid": 1344585, "relation_to_type": "type", "validated": true, "ani": 78.5202, "matched_fragments": 356, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter lectus", "strain": "strain=DSM 15365", "accession": "GCA_900112395.1", "taxid": 221126, "species_taxid": 221126, "relation_to_type": "type", "validated": true, "ani": 78.5079, "matched_fragments": 383, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_008630605.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.3304, "matched_fragments": 380, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.3258, "matched_fragments": 381, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.2703, "matched_fragments": 383, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter profundi", "strain": "strain=YC1039", "accession": "GCA_014764305.1", "taxid": 2708110, "species_taxid": 2708110, "relation_to_type": "type", "validated": true, "ani": 78.2475, "matched_fragments": 422, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 78.0195, "matched_fragments": 300, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 77.6286, "matched_fragments": 236, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 77.4544, "matched_fragments": 187, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 77.288, "matched_fragments": 248, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.0707, "matched_fragments": 251, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001418085.1", "gtdb_species": "s__Lacinutrix algicola", "ani": 100.0, "matched_fragments": 1193, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001418015.1", "gtdb_species": "s__Lacinutrix mariniflava", "ani": 87.2932, "matched_fragments": 955, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002831665.1", "gtdb_species": "s__Lacinutrix sp002831665", "ani": 86.7221, "matched_fragments": 881, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000797445.1", "gtdb_species": "s__Lacinutrix jangbogonensis", "ani": 82.255, "matched_fragments": 741, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003663945.1", "gtdb_species": "s__Lacinutrix venerupis", "ani": 81.7748, "matched_fragments": 697, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.08", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001874145.1", "gtdb_species": "s__Lacinutrix sp001874145", "ani": 80.5911, "matched_fragments": 612, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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