{ "type": "genome", "identifier": "GCF_001418205.1", "organism": "Marinomonas fungiae", "title": "Marinomonas fungiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001418205.1", "bioproject": "PRJNA224116", "biosample": "SAMN03840741", "wgs_master": "LIQF00000000.1", "refseq_category": "reference genome", "taxid": "1137284", "species_taxid": "1137284", "organism_name": "Marinomonas fungiae", "infraspecific_name": "strain=JCM 18476", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/28", "asm_name": "ASM141820v1", "asm_submitter": "Joint Genome Institute", "gbrs_paired_asm": "GCA_001418205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/418/205/GCF_001418205.1_ASM141820v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4189249", "genome_size_ungapped": "4186824", "gc_percent": "46.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001418205.1-RS_2024_12_01", "annotation_date": "2024-12-01", "total_gene_count": "3940", "protein_coding_gene_count": "3822", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-28", "dateModified": "2015-10-28", "datePublished": "2015-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinomonas fungiae" ], "sample_taxid": [ "1137284" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Not Collected" ], "sample_host_location_id": [], "data_size": "1.201 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4189249", "Number of Sequences": "36", "Longest Sequences (bp)": "554837", "N50 (bp)": "290274", "Gap Ratio (%)": "0.057886", "GCcontent (%)": "46.2", "Number of CDSs": "3827", "Average Protein Length": "323.8", "Coding Ratio (%)": "88.7", "Number of rRNAs": "5", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinomonas fungiae", "strain": "strain=JCM 18476", "accession": "GCA_001517305.1", "taxid": 1137284, "species_taxid": 1137284, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1377, "total_fragments": 1378, "ani_threshold": 95, 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"matched_fragments": 196, "total_fragments": 1378, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Marinomonadaceae;g__Marinomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.53", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.312, "cell_length": 0.158, "doubling_h": null, "growth_tmp": 25.716, "optimum_tmp": 26.875, "optimum_ph": 7.216, "genome_size": 4189249.0, "gc_content": 42.6, "coding_genes": 4110.0, "rRNA16S_genes": 7.0, "tRNA_genes": 80.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinomonas", "fungiae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }