{ "type": "genome", "identifier": "GCF_001418495.1", "organism": "Streptomyces pathocidini", "title": "Streptomyces pathocidini", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA/ARS/NCAUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001418495.1", "bioproject": "PRJNA224116", "biosample": "SAMN04004086", "wgs_master": "LIQY00000000.1", "refseq_category": "na", "taxid": "1650571", "species_taxid": "1650571", "organism_name": "Streptomyces pathocidini", "infraspecific_name": "strain=NRRL B-24287", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/28", "asm_name": "ASM141849v1", "asm_submitter": "USDA/ARS/NCAUR", "gbrs_paired_asm": "GCA_001418495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/418/495/GCF_001418495.1_ASM141849v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5542997", "genome_size_ungapped": "5541951", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "743", "contig_count": "743", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001418495.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5217", "protein_coding_gene_count": "4730", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-28", "dateModified": "2015-10-28", "datePublished": "2015-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces pathocidini" ], "sample_taxid": [ "1650571" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Lederle Labs, Pearl River, NY" ], "sample_host_location_id": [], "data_size": "1.504 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5542997", "Number of Sequences": "743", "Longest Sequences (bp)": "52611", "N50 (bp)": "11466", "Gap Ratio (%)": "0.021577", "GCcontent (%)": "71.4", "Number of CDSs": "4380", "Average Protein Length": "313.9", "Coding Ratio (%)": "74.4", "Number of rRNAs": "2", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces pathocidini", "strain": "strain=NRRL B-24287", "accession": "GCA_001418495.1", "taxid": 1650571, "species_taxid": 1650571, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1457, "total_fragments": 1472, 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"accession": "GCA_004684805.1", "taxid": 1701085, "species_taxid": 1701085, "relation_to_type": "type", "validated": true, "ani": 82.3114, "matched_fragments": 775, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces formicae", "strain": "strain=1H-GS9", "accession": "GCA_022647665.1", "taxid": 1616117, "species_taxid": 1616117, "relation_to_type": "type", "validated": true, "ani": 82.2774, "matched_fragments": 993, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hygroscopicus subsp. hygroscopicus", "strain": "strain=NBRC 13472", "accession": "GCA_001553455.1", "taxid": 68042, "species_taxid": 1912, "relation_to_type": "type", "validated": true, "ani": 82.2601, "matched_fragments": 871, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces klenkii", "strain": "strain=KCTC 29202", "accession": "GCA_003626645.1", 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"relation_to_type": "type", "validated": true, "ani": 82.0935, "matched_fragments": 783, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parvus", "strain": "strain=NRRL B-1455", "accession": "GCA_008632535.1", "taxid": 66428, "species_taxid": 66428, "relation_to_type": "type", "validated": true, "ani": 81.9795, "matched_fragments": 841, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parvus", "strain": "strain=JCM 4069", "accession": "GCA_014648875.1", "taxid": 66428, "species_taxid": 66428, "relation_to_type": "type", "validated": true, "ani": 81.8716, "matched_fragments": 872, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 81.8453, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monashensis", "strain": "strain=MUSC 1", "accession": "GCA_001866665.1", "taxid": 1678012, "species_taxid": 1678012, "relation_to_type": "type", "validated": true, "ani": 81.6539, "matched_fragments": 884, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 81.5829, "matched_fragments": 758, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces davaonensis", "strain": "strain=JCM 4913", "accession": "GCA_000349325.1", "taxid": 348043, "species_taxid": 348043, "relation_to_type": "type", "validated": true, "ani": 81.5536, "matched_fragments": 896, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pseudovenezuelae", "strain": "strain=DSM 40212", "accession": "GCA_001513955.1", "taxid": 67350, "species_taxid": 67350, "relation_to_type": "type", "validated": true, "ani": 81.3915, "matched_fragments": 908, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 81.3895, "matched_fragments": 842, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces dysideae", "strain": "strain=RV15", "accession": "GCA_001514305.1", "taxid": 909626, "species_taxid": 909626, "relation_to_type": "type", "validated": true, "ani": 81.3488, "matched_fragments": 876, "total_fragments": 1472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hokutonensis", 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