{ "type": "genome", "identifier": "GCF_001418655.1", "organism": "Streptomyces phaeochromogenes", "title": "Streptomyces phaeochromogenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA/ARS/NCAUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001418655.1", "bioproject": "PRJNA224116", "biosample": "SAMN04004087", "wgs_master": "LIQZ00000000.1", "refseq_category": "na", "taxid": "1923", "species_taxid": "1923", "organism_name": "Streptomyces phaeochromogenes", "infraspecific_name": "strain=NRRL B-1248", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/28", "asm_name": "ASM141865v1", "asm_submitter": "USDA/ARS/NCAUR", "gbrs_paired_asm": "GCA_001418655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/418/655/GCF_001418655.1_ASM141865v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10935515", "genome_size_ungapped": "10932321", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "702", "contig_count": "702", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001418655.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "9854", "protein_coding_gene_count": "9312", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-28", "dateModified": "2015-10-28", "datePublished": "2015-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces phaeochromogenes" ], "sample_taxid": [ "1923" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "2.981 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.12, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10935515", "Number of Sequences": "702", "Longest Sequences (bp)": "202479", "N50 (bp)": "29593", "Gap Ratio (%)": "0.031265", "GCcontent (%)": "70.2", "Number of CDSs": "9201", "Average Protein Length": "326.6", "Coding Ratio (%)": "82.4", "Number of rRNAs": "5", "Number of tRNAs": "80", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces phaeochromogenes", "strain": "strain=NRRL B-1248", "accession": "GCA_001418655.1", "taxid": 1923, "species_taxid": 1923, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3268, "total_fragments": 3304, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces umbrinus", "strain": "strain=JCM 4521", "accession": "GCA_014650195.1", "taxid": 67370, "species_taxid": 67370, "relation_to_type": "type", "validated": true, "ani": 95.9191, "matched_fragments": 2926, "total_fragments": 3304, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces aurantiacus", "strain": "strain=NRRL ISP-5412", "accession": "GCA_001418335.1", "taxid": 47760, "species_taxid": 47760, "relation_to_type": "type", "validated": true, "ani": 87.9943, "matched_fragments": 1806, "total_fragments": 3304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fructofermentans", "strain": "strain=JCM 4956", "accession": "GCA_014651055.1", "taxid": 152141, "species_taxid": 152141, "relation_to_type": "type", "validated": true, "ani": 86.4393, "matched_fragments": 1933, "total_fragments": 3304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mirabilis", "strain": "strain=JCM 4551", "accession": "GCA_014650275.1", "taxid": 68239, "species_taxid": 68239, "relation_to_type": "suspected-type", "validated": true, "ani": 85.0304, "matched_fragments": 2023, "total_fragments": 3304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albiflavescens", "strain": "strain=CGMCC 4.7111", "accession": "GCA_014645835.1", "taxid": 1623582, "species_taxid": 1623582, "relation_to_type": "type", "validated": true, "ani": 85.0103, "matched_fragments": 1963, "total_fragments": 3304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces olivochromogenes", "strain": "strain=DSM 40451", "accession": "GCA_001514115.1", "taxid": 1963, "species_taxid": 1963, "relation_to_type": "type", "validated": true, "ani": 84.9685, "matched_fragments": 2031, "total_fragments": 3304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces 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"accession": "GCA_002954775.1", "taxid": 2058923, "species_taxid": 2058923, "relation_to_type": "type", "validated": true, "ani": 83.874, "matched_fragments": 1821, "total_fragments": 3304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 83.8518, "matched_fragments": 1958, "total_fragments": 3304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces panaciradicis", "strain": "strain=NBRC 109811", "accession": "GCA_023516615.1", "taxid": 1470261, "species_taxid": 1470261, "relation_to_type": "type", "validated": true, "ani": 83.5047, "matched_fragments": 1747, "total_fragments": 3304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces naganishii", "strain": "strain=JCM 4654", "accession": "GCA_014650575.1", "taxid": 285447, "species_taxid": 285447, "relation_to_type": "type", "validated": true, "ani": 83.1977, "matched_fragments": 1507, "total_fragments": 3304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces silaceus", "strain": "strain=NRRL B-24166", "accession": "GCA_001419745.1", "taxid": 545123, "species_taxid": 545123, "relation_to_type": "type", "validated": true, "ani": 82.9116, "matched_fragments": 1447, "total_fragments": 3304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lasiicapitis", "strain": "strain=CGMCC 4.7349", "accession": "GCA_014646335.1", "taxid": 1923961, "species_taxid": 1923961, "relation_to_type": "type", "validated": true, "ani": 82.4592, "matched_fragments": 1645, "total_fragments": 3304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parvus", "strain": "strain=JCM 4069", "accession": "GCA_014648875.1", "taxid": 66428, "species_taxid": 66428, 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