{
    "type": "genome",
    "identifier": "GCF_001419705.1",
    "organism": "Streptomyces prasinus",
    "title": "Streptomyces prasinus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "USDA/ARS/NCAUR",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001419705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04004089",
        "wgs_master": "LIRH00000000.1",
        "refseq_category": "na",
        "taxid": "67345",
        "species_taxid": "67345",
        "organism_name": "Streptomyces prasinus",
        "infraspecific_name": "strain=NRRL B-2712",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/10/29",
        "asm_name": "ASM141970v1",
        "asm_submitter": "USDA/ARS/NCAUR",
        "gbrs_paired_asm": "GCA_001419705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/419/705/GCF_001419705.1_ASM141970v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7433599",
        "genome_size_ungapped": "7430826",
        "gc_percent": "72.000000",
        "replicon_count": "0",
        "scaffold_count": "860",
        "contig_count": "860",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001419705.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "6738",
        "protein_coding_gene_count": "6205",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-10-29",
    "dateModified": "2015-10-29",
    "datePublished": "2015-10-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces prasinus"
        ],
        "sample_taxid": [
            "67345"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain: Mallora"
        ],
        "sample_host_location_id": [],
        "data_size": "2.003 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7433599",
        "Number of Sequences": "860",
        "Longest Sequences (bp)": "53025",
        "N50 (bp)": "12922",
        "Gap Ratio (%)": "0.039792",
        "GCcontent (%)": "72.1",
        "Number of CDSs": "5896",
        "Average Protein Length": "305.3",
        "Coding Ratio (%)": "72.6",
        "Number of rRNAs": "4",
        "Number of tRNAs": "84",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces prasinus",
                "strain": "strain=NRRL B-2712",
                "accession": "GCA_001419705.1",
                "taxid": 67345,
                "species_taxid": 67345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2008,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces prasinopilosus",
                "strain": "strain=NRRL B-2711",
                "accession": "GCA_001419695.1",
                "taxid": 67344,
                "species_taxid": 67344,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.2075,
                "matched_fragments": 1212,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces hirsutus",
                "strain": "strain=NRRL B-2713",
                "accession": "GCA_001418415.1",
                "taxid": 35620,
                "species_taxid": 35620,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.26,
                "matched_fragments": 1451,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces viridosporus",
                "strain": "strain=NRRL 2414",
                "accession": "GCA_002078235.1",
                "taxid": 67581,
                "species_taxid": 67581,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.6491,
                "matched_fragments": 1306,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseostramineus",
                "strain": "strain=JCM 4385",
                "accession": "GCA_014649635.1",
                "taxid": 66898,
                "species_taxid": 66898,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 87.6168,
                "matched_fragments": 1433,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseostramineus",
                "strain": "strain=CECT 3273",
                "accession": "GCA_014203535.1",
                "taxid": 66898,
                "species_taxid": 66898,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 87.6079,
                "matched_fragments": 1436,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseoflavus",
                "strain": "strain=JCM 4479",
                "accession": "GCA_014649995.1",
                "taxid": 35619,
                "species_taxid": 35619,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8584,
                "matched_fragments": 1422,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces malachitofuscus",
                "strain": "strain=JCM 4493",
                "accession": "GCA_014650055.1",
                "taxid": 67322,
                "species_taxid": 67322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6184,
                "matched_fragments": 1381,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lomondensis",
                "strain": "strain=DSM 41428",
                "accession": "GCA_021440105.1",
                "taxid": 68229,
                "species_taxid": 68229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3195,
                "matched_fragments": 1345,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces purpurascens",
                "strain": "strain=DSM 40310",
                "accession": "GCA_021390235.1",
                "taxid": 1924,
                "species_taxid": 1924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1706,
                "matched_fragments": 1310,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces cahuitamycinicus",
                "strain": "strain=13K301",
                "accession": "GCA_002891435.1",
                "taxid": 2070367,
                "species_taxid": 2070367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0705,
                "matched_fragments": 1203,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces anthocyanicus",
                "strain": "strain=JCM 5058",
                "accession": "GCA_014651155.1",
                "taxid": 68174,
                "species_taxid": 68174,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9266,
                "matched_fragments": 1302,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rubrogriseus",
                "strain": "strain=NBRC 15455",
                "accession": "GCA_003112595.1",
                "taxid": 194673,
                "species_taxid": 194673,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7583,
                "matched_fragments": 1339,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sennicomposti",
                "strain": "strain=RCPT1-4",
                "accession": "GCA_019890635.1",
                "taxid": 2873384,
                "species_taxid": 2873384,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.138,
                "matched_fragments": 1175,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces roseirectus",
                "strain": "strain=CRXT-G-22",
                "accession": "GCA_014489635.1",
                "taxid": 2768066,
                "species_taxid": 2768066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3463,
                "matched_fragments": 1203,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.04,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001419705.1",
                "gtdb_species": "s__Streptomyces prasinus",
                "ani": 100.0,
                "matched_fragments": 2008,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900101585.1",
                "gtdb_species": "s__Streptomyces prasinopilosus",
                "ani": 94.4648,
                "matched_fragments": 1636,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001418415.1",
                "gtdb_species": "s__Streptomyces hirsutus",
                "ani": 93.2764,
                "matched_fragments": 1450,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.60",
                "min_intra_species_ani": "97.60",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000829695.1",
                "gtdb_species": "s__Streptomyces sp000829695",
                "ani": 91.2134,
                "matched_fragments": 1471,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003143855.1",
                "gtdb_species": "s__Streptomyces sp003143855",
                "ani": 89.7316,
                "matched_fragments": 1465,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.17",
                "min_intra_species_ani": "95.17",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_019049255.1",
                "gtdb_species": "s__Streptomyces sp019049255",
                "ani": 87.1057,
                "matched_fragments": 1479,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001279005.1",
                "gtdb_species": "s__Streptomyces caelestis_A",
                "ani": 87.044,
                "matched_fragments": 1437,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.58",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_014656175.1",
                "gtdb_species": "s__Streptomyces werraensis",
                "ani": 85.7276,
                "matched_fragments": 1358,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014651155.1",
                "gtdb_species": "s__Streptomyces anthocyanicus",
                "ani": 84.9002,
                "matched_fragments": 1308,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 96.9168,
                "mean_intra_species_ani": "99.40",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 31,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 27.0,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 7547881.5,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 1.0,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "prasinus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}