{ "type": "genome", "identifier": "GCF_001419765.1", "organism": "Streptomyces torulosus", "title": "Streptomyces torulosus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA/ARS/NCAUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001419765.1", "bioproject": "PRJNA224116", "biosample": "SAMN04004093", "wgs_master": "LIRK00000000.1", "refseq_category": "reference genome", "taxid": "68276", "species_taxid": "68276", "organism_name": "Streptomyces torulosus", "infraspecific_name": "strain=NRRL B-3889", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/29", "asm_name": "ASM141976v1", "asm_submitter": "USDA/ARS/NCAUR", "gbrs_paired_asm": "GCA_001419765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/419/765/GCF_001419765.1_ASM141976v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9848803", "genome_size_ungapped": "9845972", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1055", "contig_count": "1055", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001419765.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "9193", "protein_coding_gene_count": "8429", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-29", "dateModified": "2015-10-29", "datePublished": "2015-10-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces torulosus" ], "sample_taxid": [ "68276" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Iowa" ], 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"status": "inconclusive" }, { "organism_name": "Streptomyces ossamyceticus", "strain": "strain=NRRL B-3822", "accession": "GCA_001418475.1", "taxid": 249581, "species_taxid": 249581, "relation_to_type": "type", "validated": true, "ani": 95.607, "matched_fragments": 1903, "total_fragments": 2747, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces neyagawaensis", "strain": "strain=JCM 4796", "accession": "GCA_023516595.1", "taxid": 42238, "species_taxid": 42238, "relation_to_type": "type", "validated": true, "ani": 95.5062, "matched_fragments": 2147, "total_fragments": 2747, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces neyagawaensis", "strain": "strain=NRRL B-3092", "accession": "GCA_001418645.1", "taxid": 42238, "species_taxid": 42238, "relation_to_type": "type", "validated": true, "ani": 95.2316, "matched_fragments": 1709, "total_fragments": 2747, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": 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"strain=ATCC 25435", "accession": "GCA_000340335.2", "taxid": 42235, "species_taxid": 42235, "relation_to_type": "type", "validated": true, "ani": 87.5866, "matched_fragments": 1832, "total_fragments": 2747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces bottropensis", "strain": "strain=ATCC 25435", "accession": "GCA_000383595.1", "taxid": 42235, "species_taxid": 42235, "relation_to_type": "type", "validated": true, "ani": 87.5548, "matched_fragments": 1828, "total_fragments": 2747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tailanensis", "strain": "strain=TRM68348", "accession": "GCA_008386495.1", "taxid": 2569858, "species_taxid": 2569858, "relation_to_type": "type", "validated": true, "ani": 87.5298, "matched_fragments": 1741, "total_fragments": 2747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces caniscabiei", "strain": "strain=NE06-02D", "accession": 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"gtdb_species": "s__Streptomyces bottropensis", "ani": 87.5733, "matched_fragments": 1826, "total_fragments": 2747, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 96.7549, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "torulosus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }