{ "type": "genome", "identifier": "GCF_001431365.1", "organism": "Salegentibacter mishustinae", "title": "Salegentibacter mishustinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001431365.1", "bioproject": "PRJNA224116", "biosample": "SAMN04145418", "wgs_master": "LKTP00000000.1", "refseq_category": "na", "taxid": "270918", "species_taxid": "270918", "organism_name": "Salegentibacter mishustinae", "infraspecific_name": "strain=KCTC 12263", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/04", "asm_name": "ASM143136v1", "asm_submitter": "Xiamen University", "gbrs_paired_asm": "GCA_001431365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/431/365/GCF_001431365.1_ASM143136v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3775942", "genome_size_ungapped": "3775942", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001431365.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3403", "protein_coding_gene_count": "3329", "non_coding_gene_count": "49", "pubmed_id": "27081136" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-04", "dateModified": "2015-11-04", "datePublished": "2015-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Salegentibacter mishustinae" ], "sample_taxid": [ "270918" ], "sample_host_organism": [ "Strongylocentrotus intermedius" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.061 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3775942", "Number of Sequences": "38", "Longest Sequences (bp)": "639574", "N50 (bp)": "439065", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.9", "Number of CDSs": "3288", "Average Protein Length": "337.1", "Coding Ratio (%)": "88.1", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salegentibacter mishustinae", "strain": "strain=KCTC 12263", "accession": "GCA_001431365.1", "taxid": 270918, "species_taxid": 270918, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1239, "total_fragments": 1240, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salegentibacter mishustinae", "strain": "strain=DSM 23404", "accession": "GCA_002900095.1", "taxid": 270918, "species_taxid": 270918, "relation_to_type": "type", "validated": true, "ani": 99.9992, "matched_fragments": 1238, "total_fragments": 1240, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salegentibacter mishustinae", "strain": "strain=KCTC 12263", "accession": "GCA_014651335.1", "taxid": 270918, "species_taxid": 270918, "relation_to_type": "type", "validated": true, "ani": 99.9989, "matched_fragments": 1237, "total_fragments": 1240, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salegentibacter mishustinae", "strain": "strain=DSM 23404", "accession": "GCA_003254095.1", "taxid": 270918, "species_taxid": 270918, "relation_to_type": "type", "validated": true, "ani": 99.9936, "matched_fragments": 1237, "total_fragments": 1240, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salegentibacter salarius", "strain": "strain=KCTC 12974", "accession": "GCA_002833385.1", "taxid": 435906, "species_taxid": 435906, "relation_to_type": "type", "validated": true, "ani": 92.3997, "matched_fragments": 960, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter lacus", "strain": "strain=LM13S", "accession": "GCA_020164555.1", "taxid": 2873599, "species_taxid": 2873599, "relation_to_type": "type", "validated": true, "ani": 84.3583, "matched_fragments": 867, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter tibetensis", "strain": "strain=JZCK2", "accession": "GCA_020164485.1", "taxid": 2873600, "species_taxid": 2873600, "relation_to_type": "type", "validated": true, "ani": 83.2492, "matched_fragments": 828, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 76.3786, "matched_fragments": 67, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.2494, "matched_fragments": 94, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Joostella atrarenae", "strain": "strain=M1-2", "accession": "GCA_021764745.1", "taxid": 679257, "species_taxid": 679257, "relation_to_type": "type", "validated": true, "ani": 76.2116, "matched_fragments": 91, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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"GCF_000745315.1", "gtdb_species": "s__Salegentibacter sp000745315", "ani": 85.6778, "matched_fragments": 921, "total_fragments": 1240, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900142975.1", "gtdb_species": "s__Salegentibacter salegens", "ani": 85.0717, "matched_fragments": 902, "total_fragments": 1240, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900168115.1", "gtdb_species": "s__Salegentibacter salinarum", "ani": 83.2219, "matched_fragments": 846, "total_fragments": 1240, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.263, "cell_length": 0.436, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 28.0, "optimum_ph": 7.787, "genome_size": 3797932.0, "gc_content": 36.939, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.2, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Salegentibacter", "mishustinae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }