{ "type": "genome", "identifier": "GCF_001431585.1", "organism": "Stenotrophomonas pictorum JCM 9942", "title": "Stenotrophomonas pictorum JCM 9942", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001431585.1", "bioproject": "PRJNA224116", "biosample": "SAMN04207798", "wgs_master": "LLXS00000000.1", "refseq_category": "reference genome", "taxid": "1236960", "species_taxid": "86184", "organism_name": "Stenotrophomonas pictorum JCM 9942", "infraspecific_name": "strain=JCM 9942", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/04", "asm_name": "ASM143158v1", "asm_submitter": "CSIR-Institute of Microbial Technology", "gbrs_paired_asm": "GCA_001431585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/431/585/GCF_001431585.1_ASM143158v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3508292", "genome_size_ungapped": "3508292", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "84", "contig_count": "84", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001431585.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3299", "protein_coding_gene_count": "3172", "non_coding_gene_count": "71", "pubmed_id": "27014232" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-04", "dateModified": "2015-11-04", "datePublished": "2015-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Stenotrophomonas pictorum JCM 9942" ], "sample_taxid": [ "1236960" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "unknown" ], "sample_host_location_id": [], "data_size": "0.966 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3508292", "Number of Sequences": "84", "Longest Sequences (bp)": "228205", "N50 (bp)": "89339", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.0", "Number of CDSs": "3195", "Average Protein Length": "325.5", "Coding Ratio (%)": "88.9", "Number of rRNAs": "6", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Stenotrophomonas pictorum", "strain": "strain=JCM 9942", "accession": "GCA_001431585.1", "taxid": 86184, "species_taxid": 86184, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pennii", "strain": "strain=Sa5BUN4", "accession": "GCA_014836545.1", "taxid": 2762239, "species_taxid": 2762239, "relation_to_type": "type", "validated": true, "ani": 82.174, "matched_fragments": 700, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas euvesicatoria", "strain": "strain=ATCC 11633", "accession": "GCA_020880415.1", "taxid": 456327, "species_taxid": 456327, "relation_to_type": "type", "validated": true, "ani": 81.2437, "matched_fragments": 639, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas melonis", "strain": "strain=NCPPB 3434", "accession": "GCA_020783655.1", "taxid": 56456, "species_taxid": 56456, "relation_to_type": "type", "validated": true, "ani": 81.2017, "matched_fragments": 655, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas cucurbitae", "strain": "strain=CFBP2542", "accession": "GCA_002939885.1", "taxid": 56453, "species_taxid": 56453, "relation_to_type": "type", "validated": true, "ani": 81.1228, "matched_fragments": 654, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas hydrangeae", "strain": "strain=LMG 31884", "accession": "GCA_905142475.1", "taxid": 2775159, "species_taxid": 2775159, "relation_to_type": "type", "validated": true, "ani": 81.0238, "matched_fragments": 659, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas hortorum", "strain": "strain=CFBP2533", "accession": "GCA_012922215.1", "taxid": 56454, "species_taxid": 56454, "relation_to_type": "pathovar", "validated": true, "ani": 80.8869, "matched_fragments": 651, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas hortorum", "strain": 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