{
    "type": "genome",
    "identifier": "GCF_001433745.1",
    "organism": "Lacticaseibacillus zeae DSM 20178 = KCTC 3804",
    "title": "Lacticaseibacillus zeae DSM 20178 = KCTC 3804",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shanghai Majorbio",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001433745.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02369511",
        "wgs_master": "AZCT00000000.1",
        "refseq_category": "na",
        "taxid": "1423816",
        "species_taxid": "57037",
        "organism_name": "Lacticaseibacillus zeae DSM 20178 = KCTC 3804",
        "infraspecific_name": "strain=DSM 20178",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/11/06",
        "asm_name": "ASM143374v1",
        "asm_submitter": "Shanghai Majorbio",
        "gbrs_paired_asm": "GCA_001433745.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/433/745/GCF_001433745.1_ASM143374v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3121340",
        "genome_size_ungapped": "3112344",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "55",
        "contig_count": "55",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001433745.1-RS_2024_03_30",
        "annotation_date": "2024-03-30",
        "total_gene_count": "2994",
        "protein_coding_gene_count": "2817",
        "non_coding_gene_count": "60",
        "pubmed_id": "26415554"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-11-06",
    "dateModified": "2015-11-06",
    "datePublished": "2015-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lacticaseibacillus zeae DSM 20178 = KCTC 3804"
        ],
        "sample_taxid": [
            "1423816"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "-"
        ],
        "sample_host_location_id": [],
        "data_size": "0.890 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3121340",
        "Number of Sequences": "55",
        "Longest Sequences (bp)": "503232",
        "N50 (bp)": "111206",
        "Gap Ratio (%)": "0.288210",
        "GCcontent (%)": "47.7",
        "Number of CDSs": "2988",
        "Average Protein Length": "290.6",
        "Coding Ratio (%)": "83.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lacticaseibacillus zeae",
                "strain": "strain=DSM 20178",
                "accession": "GCA_001433745.1",
                "taxid": 57037,
                "species_taxid": 57037,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus zeae",
                "strain": "strain=KCTC 3804",
                "accession": "GCA_000260435.1",
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                "species_taxid": 57037,
                "relation_to_type": "type",
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                "ani": 99.9571,
                "matched_fragments": 966,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus casei",
                "strain": "strain=ATCC 393",
                "accession": "GCA_000829055.1",
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                "species_taxid": 1582,
                "relation_to_type": "suspected-type",
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                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacticaseibacillus chiayiensis",
                "strain": "strain=NCYUAS",
                "accession": "GCA_004123795.1",
                "taxid": 2100821,
                "species_taxid": 2100821,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 737,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacticaseibacillus rhamnosus",
                "strain": "strain=NRRL B-442",
                "accession": "GCA_002849515.1",
                "taxid": 47715,
                "species_taxid": 47715,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 538,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacticaseibacillus rhamnosus",
                "strain": "strain=NBRC 3425",
                "accession": "GCA_007990855.1",
                "taxid": 47715,
                "species_taxid": 47715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9338,
                "matched_fragments": 499,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000260435.1",
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                "matched_fragments": 966,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "0.91",
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                "status": "conclusive"
            },
            {
                "accession": "GCF_000829055.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_004123795.1",
                "gtdb_species": "s__Lacticaseibacillus chiayiensis",
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                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
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                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900636965.1",
                "gtdb_species": "s__Lacticaseibacillus rhamnosus",
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                "matched_fragments": 548,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "96.73",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 237,
                "status": "-"
            },
            {
                "accession": "GCF_000829035.1",
                "gtdb_species": "s__Lacticaseibacillus paracasei",
                "ani": 80.3878,
                "matched_fragments": 453,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.86",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 252,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Lacticaseibacillus",
        "zeae",
        "DSM",
        "20178",
        "=",
        "KCTC",
        "3804"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}