{ "type": "genome", "identifier": "GCF_001433915.1", "organism": "Lactobacillus pasteurii DSM 23907 = CRBIP 24.76", "title": "Lactobacillus pasteurii DSM 23907 = CRBIP 24.76", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Majorbio", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001433915.1", "bioproject": "PRJNA224116", "biosample": "SAMN02369411", "wgs_master": "AYZN00000000.1", "refseq_category": "na", "taxid": "1423790", "species_taxid": "872327", "organism_name": "Lactobacillus pasteurii DSM 23907 = CRBIP 24.76", "infraspecific_name": "strain=DSM 23907", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/06", "asm_name": "ASM143391v1", "asm_submitter": "Shanghai Majorbio", "gbrs_paired_asm": "GCA_001433915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/433/915/GCF_001433915.1_ASM143391v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1868110", "genome_size_ungapped": "1868110", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001433915.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "1842", "protein_coding_gene_count": "1732", "non_coding_gene_count": "42", "pubmed_id": "26415554" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-06", "dateModified": "2015-11-06", "datePublished": "2015-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactobacillus pasteurii DSM 23907 = CRBIP 24.76" ], "sample_taxid": [ "1423790" ], "sample_host_organism": [ "chicken" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.529 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1868110", "Number of Sequences": "44", "Longest Sequences (bp)": "620946", "N50 (bp)": "168074", "Gap Ratio (%)": "0.000161", "GCcontent (%)": "38.5", "Number of CDSs": "1807", "Average Protein Length": "303.3", "Coding Ratio (%)": "88.0", "Number of rRNAs": "2", "Number of tRNAs": "36", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactobacillus pasteurii", "strain": "strain=DSM 23907", "accession": "GCA_001433915.1", "taxid": 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604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus johnsonii", "strain": "strain=ATCC 33200", "accession": "GCA_000159355.1", "taxid": 33959, "species_taxid": 33959, "relation_to_type": "type", "validated": true, "ani": 78.2327, "matched_fragments": 115, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus johnsonii", "strain": "strain=ATCC 33200", "accession": "GCA_001433975.1", "taxid": 33959, "species_taxid": 33959, "relation_to_type": "type", "validated": true, "ani": 78.0637, "matched_fragments": 117, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus laiwuensis", "strain": "strain=F551-2", "accession": "GCA_019972835.1", "taxid": 2841034, "species_taxid": 2841034, "relation_to_type": "type", "validated": true, "ani": 77.6474, "matched_fragments": 80, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" } ], 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