{
    "type": "genome",
    "identifier": "GCF_001433985.1",
    "organism": "Lactobacillus amylovorus DSM 20531",
    "title": "Lactobacillus amylovorus DSM 20531",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shanghai Majorbio",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001433985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02369422",
        "wgs_master": "AZCM00000000.1",
        "refseq_category": "na",
        "taxid": "1423723",
        "species_taxid": "1604",
        "organism_name": "Lactobacillus amylovorus DSM 20531",
        "infraspecific_name": "strain=DSM 20531",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/11/06",
        "asm_name": "ASM143398v1",
        "asm_submitter": "Shanghai Majorbio",
        "gbrs_paired_asm": "GCA_001433985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/433/985/GCF_001433985.1_ASM143398v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2017377",
        "genome_size_ungapped": "2016257",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "116",
        "contig_count": "116",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001433985.1-RS_2024_04_01",
        "annotation_date": "2024-04-01",
        "total_gene_count": "2112",
        "protein_coding_gene_count": "1910",
        "non_coding_gene_count": "61",
        "pubmed_id": "26415554"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-11-06",
    "dateModified": "2015-11-06",
    "datePublished": "2015-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactobacillus amylovorus DSM 20531"
        ],
        "sample_taxid": [
            "1423723"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "-"
        ],
        "sample_host_location_id": [],
        "data_size": "0.573 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2017377",
        "Number of Sequences": "116",
        "Longest Sequences (bp)": "134727",
        "N50 (bp)": "51213",
        "Gap Ratio (%)": "0.055518",
        "GCcontent (%)": "37.8",
        "Number of CDSs": "2063",
        "Average Protein Length": "283.2",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lactobacillus amylovorus",
                "strain": "strain=DSM 20531",
                "accession": "GCA_001433985.1",
                "taxid": 1604,
                "species_taxid": 1604,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 616,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus amylovorus",
                "strain": "strain=DSM 20531",
                "accession": "GCA_002706375.1",
                "taxid": 1604,
                "species_taxid": 1604,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9509,
                "matched_fragments": 616,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus kitasatonis",
                "strain": "strain=JCM 1039",
                "accession": "GCA_000615285.1",
                "taxid": 237446,
                "species_taxid": 237446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.5734,
                "matched_fragments": 495,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus kitasatonis",
                "strain": "strain=DSM 16761",
                "accession": "GCA_001434435.1",
                "taxid": 237446,
                "species_taxid": 237446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.51,
                "matched_fragments": 505,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus gallinarum",
                "strain": "strain=DSM 10532",
                "accession": "GCA_001434975.1",
                "taxid": 52242,
                "species_taxid": 52242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6284,
                "matched_fragments": 400,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus ultunensis",
                "strain": "strain=DSM 16047",
                "accession": "GCA_001436305.1",
                "taxid": 227945,
                "species_taxid": 227945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5735,
                "matched_fragments": 398,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus intestinalis",
                "strain": "strain=DSM 6629",
                "accession": "GCA_024397795.1",
                "taxid": 151781,
                "species_taxid": 151781,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1721,
                "matched_fragments": 236,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus laiwuensis",
                "strain": "strain=F551-2",
                "accession": "GCA_019972835.1",
                "taxid": 2841034,
                "species_taxid": 2841034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6444,
                "matched_fragments": 104,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus huangpiensis",
                "strain": "strain=F306-1",
                "accession": "GCA_019972815.1",
                "taxid": 2799571,
                "species_taxid": 2799571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6404,
                "matched_fragments": 92,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002706375.1",
                "gtdb_species": "s__Lactobacillus amylovorus",
                "ani": 99.9509,
                "matched_fragments": 616,
                "total_fragments": 618,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.43",
                "min_intra_species_ani": "96.81",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 24,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000615285.1",
                "gtdb_species": "s__Lactobacillus kitasatonis",
                "ani": 92.5481,
                "matched_fragments": 496,
                "total_fragments": 618,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "97.76",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001434975.1",
                "gtdb_species": "s__Lactobacillus gallinarum",
                "ani": 85.6557,
                "matched_fragments": 399,
                "total_fragments": 618,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_001436305.1",
                "gtdb_species": "s__Lactobacillus ultunensis",
                "ani": 83.5459,
                "matched_fragments": 399,
                "total_fragments": 618,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001591845.1",
                "gtdb_species": "s__Lactobacillus acidophilus",
                "ani": 83.3992,
                "matched_fragments": 404,
                "total_fragments": 618,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.12",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 59,
                "status": "-"
            },
            {
                "accession": "GCF_000160855.1",
                "gtdb_species": "s__Lactobacillus helveticus",
                "ani": 83.3724,
                "matched_fragments": 373,
                "total_fragments": 618,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "96.37",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 146,
                "status": "-"
            },
            {
                "accession": "GCF_018987235.1",
                "gtdb_species": "s__Lactobacillus crispatus",
                "ani": 82.7566,
                "matched_fragments": 350,
                "total_fragments": 618,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.75",
                "min_intra_species_ani": "96.25",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 161,
                "status": "-"
            },
            {
                "accession": "GCF_900103655.1",
                "gtdb_species": "s__Lactobacillus kefiranofaciens",
                "ani": 82.6685,
                "matched_fragments": 341,
                "total_fragments": 618,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.18",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000178475.1",
                "gtdb_species": "s__Lactobacillus amylolyticus",
                "ani": 81.7237,
                "matched_fragments": 223,
                "total_fragments": 618,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_004009905.1",
                "gtdb_species": "s__Lactobacillus xujianguonis",
                "ani": 80.5426,
                "matched_fragments": 250,
                "total_fragments": 618,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.82",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.301,
        "doubling_h": -0.086,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 2040650.231,
        "gc_content": 36.612,
        "coding_genes": 1873.333,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 56.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Lactobacillus",
        "amylovorus",
        "DSM",
        "20531"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}