{ "type": "genome", "identifier": "GCF_001434005.1", "organism": "Lactobacillus crispatus DSM 20584 = JCM 1185 = ATCC 33820", "title": "Lactobacillus crispatus DSM 20584 = JCM 1185 = ATCC 33820", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Majorbio", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001434005.1", "bioproject": "PRJNA224116", "biosample": "SAMN02369387", "wgs_master": "AZCW00000000.1", "refseq_category": "na", "taxid": "1423736", "species_taxid": "47770", "organism_name": "Lactobacillus crispatus DSM 20584 = JCM 1185 = ATCC 33820", "infraspecific_name": "strain=DSM 20584", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/06", "asm_name": "ASM143400v1", "asm_submitter": "Shanghai Majorbio", "gbrs_paired_asm": "GCA_001434005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/434/005/GCF_001434005.1_ASM143400v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2057071", "genome_size_ungapped": "2056373", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "150", "contig_count": "150", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001434005.1-RS_2024_04_21", "annotation_date": "2024-04-21", "total_gene_count": "2054", "protein_coding_gene_count": "1896", "non_coding_gene_count": "52", "pubmed_id": "26415554" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-06", "dateModified": "2015-11-06", "datePublished": "2015-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactobacillus crispatus DSM 20584 = JCM 1185 = ATCC 33820" ], "sample_taxid": [ "1423736" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "-" ], "sample_host_location_id": [], "data_size": "0.583 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2057071", "Number of Sequences": "150", "Longest Sequences (bp)": "80409", "N50 (bp)": "28029", "Gap Ratio (%)": "0.033932", "GCcontent (%)": "36.6", "Number of CDSs": "2017", "Average Protein Length": "295.2", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactobacillus crispatus", "strain": "strain=DSM 20584", "accession": "GCA_001434005.1", "taxid": 47770, "species_taxid": 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