{
    "type": "genome",
    "identifier": "GCF_001434365.1",
    "organism": "Limosilactobacillus gastricus DSM 16045",
    "title": "Limosilactobacillus gastricus DSM 16045",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shanghai Majorbio",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001434365.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02369419",
        "wgs_master": "AZFN00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1423749",
        "species_taxid": "227942",
        "organism_name": "Limosilactobacillus gastricus DSM 16045",
        "infraspecific_name": "strain=DSM 16045",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/11/06",
        "asm_name": "ASM143436v1",
        "asm_submitter": "Shanghai Majorbio",
        "gbrs_paired_asm": "GCA_001434365.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/434/365/GCF_001434365.1_ASM143436v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1848461",
        "genome_size_ungapped": "1848189",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "66",
        "contig_count": "66",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001434365.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "1884",
        "protein_coding_gene_count": "1779",
        "non_coding_gene_count": "43",
        "pubmed_id": "26415554"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-11-06",
    "dateModified": "2015-11-06",
    "datePublished": "2015-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Limosilactobacillus gastricus DSM 16045"
        ],
        "sample_taxid": [
            "1423749"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.529 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1848461",
        "Number of Sequences": "66",
        "Longest Sequences (bp)": "126654",
        "N50 (bp)": "82805",
        "Gap Ratio (%)": "0.015635",
        "GCcontent (%)": "41.6",
        "Number of CDSs": "1820",
        "Average Protein Length": "301.7",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Limosilactobacillus gastricus",
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                "accession": "GCA_001434365.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Limosilactobacillus equigenerosi",
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                "accession": "GCA_001311375.1",
                "taxid": 417373,
                "species_taxid": 417373,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6169,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus equigenerosi",
                "strain": "strain=NRIC 0697",
                "accession": "GCA_001570685.1",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus equigenerosi",
                "strain": "strain=DSM 18793",
                "accession": "GCA_001435245.1",
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                "species_taxid": 417373,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 122,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus portuensis",
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                "accession": "GCA_014838735.1",
                "taxid": 2742601,
                "species_taxid": 2742601,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5382,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus urinaemulieris",
                "strain": "strain=c9Ua_26_M",
                "accession": "GCA_014838745.1",
                "taxid": 2742600,
                "species_taxid": 2742600,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus frumenti",
                "strain": "strain=DSM 13145",
                "accession": "GCA_001436045.1",
                "taxid": 104955,
                "species_taxid": 104955,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1434,
                "matched_fragments": 62,
                "total_fragments": 587,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
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                "accession": "GCF_001434365.1",
                "gtdb_species": "s__Limosilactobacillus gastricus",
                "ani": 100.0,
                "matched_fragments": 585,
                "total_fragments": 587,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.66",
                "min_intra_species_ani": "95.34",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
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            },
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                "accession": "GCF_001311375.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000161935.1",
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                "matched_fragments": 59,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016900115.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
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            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
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            },
            {
                "accession": "GCA_019117445.1",
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                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
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        "genome_size": null,
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        "coding_genes": null,
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        "gram_stain": null,
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        "facultative_respiration": null,
        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Limosilactobacillus",
        "gastricus",
        "DSM",
        "16045"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}