# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_7	LOCUS_00070	sequence001:7807..8313(-)	frameshift		8336	WP_011254359.1	metallophosphoesterase	100.0	49.8	67.2
MGA_8	LOCUS_00080	sequence001:8277..8858(-)	frameshift		8826,8339	WP_011254359.1	metallophosphoesterase	89.1	42.0	84.3
MGA_30	LOCUS_00300	sequence001:36035..36694(-)	frameshift		36892,36679	WP_003640299.1	replication-associated recombination protein A	98.6	47.9	64.4
MGA_31	LOCUS_00310	sequence001:36848..37117(-)	frameshift,internal_stop_codon	37145..37147(-)	36682,36892	WP_003640299.1	replication-associated recombination protein A	84.3	16.7	76.0
MGA_40	LOCUS_00400	sequence001:43977..44240(+)	frameshift		44198	WP_003547614.1	8-oxo-dGTP diphosphatase	85.1	50.7	83.8
MGA_53	LOCUS_00530	sequence001:56647..57096(+)	frameshift		56518	WP_003547715.1	M23 family metallopeptidase	98.7	69.0	79.6
MGA_55	LOCUS_00550	sequence001:58586..58714(+)	internal_stop_codon	58439..58441(+)		WP_003547721.1	temperature-sensitive replication protein	83.3	16.4	82.9
MGA_63	LOCUS_00620	sequence002:3550..3759(+)	frameshift		3684	WP_000973424.1	IS66 family insertion sequence element accessory protein TnpB	65.2	38.8	71.1
MGA_79	LOCUS_00780	sequence002:17666..17890(-)	partial			WP_003548475.1	phosphatidylserine decarboxylase family protein	93.2	16.1	94.2
MGA_81	LOCUS_00800	sequence002:18540..18866(-)	frameshift,internal_stop_codon	18567..18569(-),18922..18924(-)	19072,18593,18879	WP_003549576.1	DsbA family oxidoreductase	84.3	41.9	67.0
MGA_82	LOCUS_00810	sequence002:18922..19080(-)	frameshift,internal_stop_codon	18922..18924(-)	19072,18879	WP_003549576.1	DsbA family oxidoreductase	100.0	24.0	78.8
MGA_86	LOCUS_00850	sequence002:21487..22161(-)	internal_stop_codon	22198..22200(-)		WP_011254317.1	LPXTG cell wall anchor domain-containing protein	41.1	3.5	55.9
MGA_87	LOCUS_00860	sequence002:22198..22821(-)	internal_stop_codon	22198..22200(-)		WP_011254318.1	YSIRK-type signal peptide-containing protein	95.2	8.5	48.5
MGA_88	LOCUS_00870	sequence002:22964..23647(-)	internal_stop_codon	23720..23722(-)		WP_011254547.1	YSIRK-type signal peptide-containing protein	62.1	11.2	36.1
MGA_89	LOCUS_00880	sequence002:23720..24193(-)	internal_stop_codon	23720..23722(-)		WP_011254318.1	YSIRK-type signal peptide-containing protein	80.3	5.7	36.3
MGA_93	LOCUS_00920	sequence003:1011..1256(-)	frameshift		1269,1381	WP_002288289.1	alpha/beta hydrolase	95.1	23.1	59.7
MGA_94	LOCUS_00930	sequence003:1358..2176(-)	partial			WP_025080575.1	alpha/beta hydrolase	63.6	57.7	57.5
MGA_95	LOCUS_00940	sequence003:2324..2524(-)	frameshift		2573	WP_011254447.1	GNAT family N-acetyltransferase	89.4	34.7	54.2
MGA_96	LOCUS_00950	sequence003:2535..2837(-)	frameshift		2573	WP_011254447.1	GNAT family N-acetyltransferase	84.0	49.4	52.4
MGA_101	LOCUS_01000	sequence004:151..324(-)	frameshift,internal_stop_codon	51..53(-),510..512(-)	362,173	WP_011254239.1	MFS transporter	91.2	11.3	67.3
MGA_102	LOCUS_01010	sequence004:510..1280(-)	frameshift,internal_stop_codon	510..512(-)	362	WP_011254239.1	MFS transporter	100.0	55.4	74.6
MGA_110	LOCUS_01080	sequence006:17..280(-)	partial			WP_003132077.1	MurR/RpiR family transcriptional regulator	87.4	26.9	35.5
MGA_118	LOCUS_01160	sequence007:2276..2398(+)	partial			WP_002816262.1	CopY/TcrY family copper transport repressor	82.5	23.1	100.0
MGA_120	LOCUS_01180	sequence007:4755..5021(-)	internal_stop_codon	5079..5081(-)		WP_002291207.1	multidrug efflux MFS transporter EfmA	92.0	18.9	59.3
MGA_121	LOCUS_01190	sequence007:5079..5417(-)	frameshift,internal_stop_codon	5077..5079(-)	5457,5547	WP_187289197.1	MFS transporter	100.0	26.3	49.1
MGA_138	LOCUS_01340	sequence010:1983..2489(+)	internal_stop_codon	2487..2489(+)		WP_003549614.1	glycerol kinase GlpK	100.0	33.4	87.5
MGA_139	LOCUS_01350	sequence010:2523..3053(+)	internal_stop_codon	3051..3053(+),2487..2489(+)		WP_003549614.1	glycerol kinase GlpK	100.0	35.2	89.2
MGA_140	LOCUS_01360	sequence010:3126..3485(+)	internal_stop_codon	3051..3053(+)		WP_003549614.1	glycerol kinase GlpK	99.2	23.6	81.4
MGA_143	LOCUS_01390	sequence011:68..403(-)	partial			WP_011836561.1	EutP/PduV family microcompartment system protein	95.5	73.6	50.0
MGA_146	LOCUS_01420	sequence011:1511..2032(-)	partial			WP_062281570.1	ECF transporter S component	95.4	66.7	48.5
MGA_151	LOCUS_01470	sequence012:2534..4504(-)	partial			WP_127742798.1	class III lanthionine synthetase LanKC	52.6	38.7	30.5
MGA_182	LOCUS_01780	sequence014:2204..2923(-)	partial			WP_011475695.1	DUF4767 domain-containing protein	70.3	46.4	32.2
MGA_184	LOCUS_01800	sequence014:4645..5088(-)	frameshift		5244,5093	WP_003548246.1	methionine gamma-lyase family protein	87.1	30.8	89.1
MGA_185	LOCUS_01810	sequence014:5061..5255(-)	frameshift		5244,5093	WP_003548246.1	methionine gamma-lyase family protein	82.8	12.7	90.6
MGA_209	LOCUS_02030	sequence018:3979..>4913(-)	partial			WP_003546183.1	tyrosine-type recombinase/integrase	95.5	74.0	38.9
MGA_213	LOCUS_02070	sequence019:4334..4822(-)	partial			WP_011476124.1	polyprenyl synthetase family protein	91.4	44.5	49.3
MGA_221	LOCUS_02150	sequence021:3442..3816(+)	partial			WP_003546370.1	DUF2974 domain-containing protein	100.0	40.5	76.6
MGA_222	LOCUS_02160	sequence021:3890..>4748(-)	partial			WP_011101247.1	ISL3-like element ISP1 family transposase	93.3	63.6	37.5
MGA_232	LOCUS_02250	sequence023:2018..2437(+)	frameshift		2006	WP_003550018.1	PepSY domain-containing protein	100.0	72.0	63.3
MGA_242	LOCUS_02350	sequence024:5953..6660(+)	partial			WP_003546414.1	CPBP family intramembrane metalloprotease	93.2	55.7	30.5
MGA_244	LOCUS_02370	sequence024:7078..7413(+)	internal_stop_codon	7411..7413(+)		WP_014566242.1	hypothetical protein	87.4	71.2	68.0
MGA_246	LOCUS_02390	sequence024:9041..9871(-)	frameshift		9046	WP_011254618.1	GH25 family lysozyme	97.8	84.2	80.5
MGA_249	LOCUS_02420	sequence024:12083..13603(-)	frameshift		13820	WP_015613435.1	ABC transporter permease	99.8	60.0	76.4
MGA_250	LOCUS_02430	sequence024:13785..14585(-)	frameshift		13820	WP_015613435.1	ABC transporter permease	97.0	30.6	77.5
MGA_259	LOCUS_02520	sequence024:24785..25006(+)	partial			WP_011254611.1	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	56.2	16.9	85.4
MGA_260	LOCUS_02530	sequence024:24921..25607(+)	partial			WP_003549571.1	APC family permease	100.0	49.2	82.0
MGA_277	LOCUS_02670	sequence028:3353..3478(-)	partial			WP_003547019.1	DUF441 domain-containing protein	100.0	27.2	68.3
MGA_278	LOCUS_02680	sequence028:3482..3658(-)	partial			WP_011254072.1	IMP dehydrogenase	100.0	15.3	93.1
MGA_281	LOCUS_02700	sequence029:963..1412(+)	internal_stop_codon	1410..1412(+)		WP_003547856.1	glycosyltransferase family 2 protein	100.0	48.7	64.9
MGA_282	LOCUS_02710	sequence029:1440..1889(+)	internal_stop_codon	1410..1412(+)		WP_003547856.1	glycosyltransferase family 2 protein	100.0	48.1	75.8
MGA_287	LOCUS_02760	sequence030:2700..3209(-)	partial			WP_014565478.1	SLAP domain-containing protein	71.0	28.9	39.0
MGA_291	LOCUS_02790	sequence031:1080..1697(-)	frameshift		1166	WP_003549794.1	DeoR/GlpR family DNA-binding transcription regulator	94.1	76.9	83.9
MGA_300	LOCUS_02880	sequence032:2184..2963(-)	frameshift		2965	WP_011948690.1	FAD-binding oxidoreductase	98.5	54.8	39.5
MGA_301	LOCUS_02890	sequence032:2963..3583(-)	frameshift		2965	WP_010965834.1	FAD-binding oxidoreductase	99.5	44.1	47.1
MGA_302	LOCUS_02900	sequence033:45..314(-)	partial			WP_011020109.1	ATP-binding protein	98.9	18.1	36.4
MGA_306	LOCUS_02940	sequence033:2865..3686(+)	partial			WP_003549839.1	O-antigen ligase family protein	99.6	54.1	83.1
MGA_312	LOCUS_02990	sequence035:735..971(-)	internal_stop_codon	735..737(-)		WP_003546833.1	YegS/Rv2252/BmrU family lipid kinase	93.6	23.2	65.8
MGA_333	LOCUS_03200	sequence035:22302..22439(+)	frameshift		22533,22412,22285	WP_011476411.1	glutamate/gamma-aminobutyrate family transporter YjeM	82.2	7.5	86.5
MGA_334	LOCUS_03210	sequence035:22634..23635(+)	frameshift		22533,22415	WP_011476411.1	glutamate/gamma-aminobutyrate family transporter YjeM	96.1	64.5	58.4
MGA_336	LOCUS_03230	sequence036:116..460(-)	frameshift		479	WP_011102117.1	amino acid permease	94.7	23.5	68.5
MGA_337	LOCUS_03240	sequence036:381..1469(-)	frameshift		479	WP_011102117.1	amino acid permease	92.8	73.0	76.2
MGA_341	LOCUS_03280	sequence037:2357..3415(+)	partial			WP_003546245.1	SLAP domain-containing protein	91.2	63.1	30.3
MGA_351	LOCUS_03360	sequence039:1881..2540(-)	frameshift		2602	WP_011254438.1	helix-turn-helix domain-containing protein	37.0	63.8	44.4
MGA_352	LOCUS_03370	sequence039:2658..3590(-)	partial			WP_011254067.1	cation:proton antiporter	97.1	49.3	79.7
MGA_355	LOCUS_03390	sequence040:428..805(-)	internal_stop_codon	875..877(-)		WP_011068831.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	98.4	30.5	61.0
MGA_356	LOCUS_03400	sequence040:875..1375(-)	frameshift,internal_stop_codon	875..877(-)	1385	WP_011068831.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	100.0	41.2	69.3
MGA_365	LOCUS_03460	sequence042:858..1610(-)	frameshift		878	WP_003546245.1	SLAP domain-containing protein	99.6	49.7	75.9
MGA_366	LOCUS_03470	sequence042:2036..2197(-)	frameshift		2288	WP_003546242.1	PTS sugar transporter subunit IIC	100.0	15.6	63.0
MGA_367	LOCUS_03480	sequence042:2253..2870(-)	frameshift		2288,2877	WP_003546242.1	PTS sugar transporter subunit IIC	94.6	56.2	75.9
MGA_368	LOCUS_03490	sequence042:2854..3066(-)	frameshift		2877	WP_003546242.1	PTS sugar transporter subunit IIC	91.4	18.4	68.8
MGA_378	LOCUS_03580	sequence046:1103..1417(-)	frameshift		1527	WP_003549962.1	SEC10/PgrA surface exclusion domain-containing protein	99.0	36.8	87.4
MGA_379	LOCUS_03590	sequence046:1444..1812(-)	frameshift		1527	WP_003549962.1	SEC10/PgrA surface exclusion domain-containing protein	77.0	33.6	80.9
MGA_384	LOCUS_03640	sequence046:5990..6139(+)	frameshift		6136	WP_225852600.1	hypothetical protein	95.9	48.5	70.2
MGA_385	LOCUS_03650	sequence046:6295..6915(-)	partial			WP_011254541.1	calcium-translocating P-type ATPase, PMCA-type	100.0	23.1	78.2
MGA_386	LOCUS_03660	sequence046:6902..7756(-)	partial			WP_011254541.1	calcium-translocating P-type ATPase, PMCA-type	99.6	32.2	70.3
MGA_391	LOCUS_03710	sequence046:13064..14287(+)	partial			WP_003549953.1	aspartate-alanine antiporter	100.0	73.7	75.9
MGA_403	LOCUS_03830	sequence047:771..923(-)	internal_stop_codon	771..773(-)		WP_003548923.1	helix-turn-helix transcriptional regulator	100.0	15.6	84.0
MGA_412	LOCUS_03910	sequence050:2231..2644(+)	frameshift,internal_stop_codon	1961..1963(+),1979..1981(+),2171..2173(+)	2560	WP_011476619.1	Fic family protein	81.0	44.4	49.5
MGA_417	LOCUS_03950	sequence052:99..746(-)	internal_stop_codon	750..752(-)		WP_011254534.1	ABC transporter ATP-binding protein	100.0	40.3	85.6
MGA_418	LOCUS_03960	sequence052:750..1703(-)	internal_stop_codon	750..752(-)		WP_011254534.1	ABC transporter ATP-binding protein	100.0	59.4	89.9
MGA_421	LOCUS_03990	sequence053:1021..1356(+)	frameshift,internal_stop_codon	1354..1356(+)	1359	WP_003546921.1	6-phospho-beta-glucosidase	100.0	23.0	96.4
MGA_422	LOCUS_04000	sequence053:1361..2329(+)	frameshift,internal_stop_codon	1354..1356(+)	2320,1359	WP_003546921.1	6-phospho-beta-glucosidase	99.1	66.4	92.8
MGA_423	LOCUS_04010	sequence053:2311..2508(+)	frameshift		2320	WP_003546921.1	6-phospho-beta-glucosidase	96.9	11.2	79.4
MGA_426	LOCUS_04030	sequence054:907..1065(+)	frameshift		1062	WP_011241777.1	recombinase family protein	100.0	26.8	100.0
MGA_427	LOCUS_04040	sequence054:1079..1444(+)	frameshift		1062	WP_011241777.1	recombinase family protein	89.3	55.7	94.4
MGA_435	LOCUS_04110	sequence056:71..259(+)	partial			WP_011254138.1	deoxyribose-phosphate aldolase	100.0	26.2	87.1
MGA_439	LOCUS_04140	sequence057:95..355(-)	frameshift		375	WP_011254493.1	hypothetical protein	96.5	48.5	60.2
MGA_440	LOCUS_04150	sequence057:352..624(-)	frameshift		375	WP_011254493.1	hypothetical protein	83.3	40.9	61.3
MGA_451	LOCUS_04260	sequence057:14886..15218(-)	frameshift		15264	WP_011016964.1	CRISPR-associated protein Cas4	98.2	65.9	45.4
MGA_457	LOCUS_04320	sequence057:22428..>23192(-)	partial			WP_003548355.1	phosphoribosylamine--glycine ligase	96.9	58.2	93.9
MGA_461	LOCUS_04360	sequence058:1437..1673(+)	frameshift		1649	WP_003546191.1	metallophosphoesterase family protein	91.0	24.6	77.5
MGA_462	LOCUS_04370	sequence058:1688..1990(+)	frameshift,internal_stop_codon	2158..2160(+)	1649,1982	WP_003546191.1	metallophosphoesterase family protein	100.0	34.6	58.0
MGA_463	LOCUS_04380	sequence058:1947..2159(+)	frameshift,internal_stop_codon	2157..2159(+)	1984	WP_003546191.1	metallophosphoesterase family protein	81.4	19.7	68.4
MGA_470	LOCUS_04440	sequence061:17..142(-)	partial			WP_003546881.1	N-acetyldiaminopimelate deacetylase	92.7	9.9	89.5
MGA_474	LOCUS_04480	sequence062:939..1130(+)	partial			WP_003549279.1	hypothetical protein	96.8	51.7	55.7
MGA_478	LOCUS_04510	sequence063:37..210(-)	partial			WP_003549510.1	CBS domain-containing protein	93.0	33.5	92.5
MGA_481	LOCUS_04540	sequence064:496..1398(-)	partial			WP_014565478.1	SLAP domain-containing protein	89.3	74.3	44.2
MGA_482	LOCUS_04550	sequence064:1503..2102(+)	partial			WP_003548412.1	SLAP domain-containing protein	97.5	25.5	28.4
MGA_489	LOCUS_04610	sequence067:732..962(-)	partial			WP_000997689.1	replication initiator protein A	93.4	20.5	38.0
MGA_492	LOCUS_04630	sequence068:953..1453(-)	frameshift		1442	WP_002263020.1	DNA adenine methylase	97.6	56.5	47.9
MGA_493	LOCUS_04640	sequence068:1567..2469(-)	frameshift		2612	WP_100190734.1	IS3 family transposase	82.0	45.8	34.6
MGA_494	LOCUS_04650	sequence068:2568..2855(-)	frameshift		2845	WP_011475832.1	IS3 family transposase	81.1	36.0	48.8
MGA_495	LOCUS_04660	sequence068:2837..3271(-)	frameshift		2842	WP_010012236.1	helix-turn-helix domain-containing protein	94.4	60.3	39.7
MGA_502	LOCUS_04730	sequence068:8299..8835(-)	partial			WP_003132112.1	NUDIX domain-containing protein	71.9	77.6	54.3
MGA_515	LOCUS_04860	sequence068:17143..17355(+)	partial			WP_011101368.1	winged helix-turn-helix transcriptional regulator	84.3	48.8	62.7
MGA_524	LOCUS_04940	sequence070:1803..2048(-)	partial			WP_011254017.1	DEAD/DEAH box helicase	100.0	8.6	81.5
MGA_526	LOCUS_04950	sequence071:73..384(+)	partial			WP_003566163.1	hypothetical protein	92.2	67.4	37.9
MGA_528	LOCUS_04970	sequence071:913..1785(-)	frameshift		1774	WP_057811338.1	hypothetical protein	99.0	76.7	82.2
MGA_529	LOCUS_04980	sequence071:1766..2038(-)	frameshift		1774	WP_057811338.1	hypothetical protein	97.8	23.5	69.3
MGA_530	LOCUS_04990	sequence072:1..965(+)	frameshift		959	WP_003547799.1	ATP-binding cassette domain-containing protein	97.2	61.2	61.1
MGA_531	LOCUS_05000	sequence072:941..1096(+)	frameshift		959	WP_003547799.1	ATP-binding cassette domain-containing protein	86.3	8.7	65.9
MGA_532	LOCUS_05010	sequence073:41..313(+)	partial			WP_011921897.1	NADP-dependent oxidoreductase	92.2	24.9	49.4
MGA_534	LOCUS_05030	sequence074:53..481(+)	partial			WP_011254281.1	PTS sugar transporter subunit IIC	97.9	29.3	79.9
MGA_545	LOCUS_05120	sequence077:127..843(-)	partial			WP_002468002.1	ABC transporter ATP-binding protein	76.5	62.2	34.0
MGA_549	LOCUS_05160	sequence079:166..594(+)	frameshift		864,561	WP_003546265.1	calcium-translocating P-type ATPase, PMCA-type	93.0	15.3	75.0
MGA_550	LOCUS_05170	sequence079:708..968(+)	frameshift		864,561	WP_003546265.1	calcium-translocating P-type ATPase, PMCA-type	65.1	6.3	82.1
MGA_551	LOCUS_05180	sequence079:883..1749(+)	frameshift		1731,863	WP_003546265.1	calcium-translocating P-type ATPase, PMCA-type	98.6	36.0	67.2
MGA_552	LOCUS_05190	sequence079:1727..2683(+)	frameshift		1731	WP_003546265.1	calcium-translocating P-type ATPase, PMCA-type	99.7	35.6	89.0
MGA_572	LOCUS_05390	sequence080:1282..1851(+)	partial			WP_011674287.1	mechanosensitive ion channel family protein	95.2	61.9	44.4
MGA_576	LOCUS_05420	sequence082:20..319(-)	partial			WP_002669815.1	Rpn family recombination-promoting nuclease/putative transposase	96.0	35.8	35.8
MGA_577	LOCUS_05430	sequence082:521..1270(+)	partial			WP_010884064.1	TIGR02452 family protein	72.3	66.3	33.3
MGA_592	LOCUS_05530	sequence086:1396..1671(+)	frameshift		1349	WP_003550049.1	DUF3290 domain-containing protein	100.0	61.1	80.2
MGA_596	LOCUS_05570	sequence088:446..1408(+)	frameshift		1039	WP_011254440.1	mucus-binding protein	67.2	23.0	46.8
MGA_607	LOCUS_05670	sequence090:6197..6484(-)	internal_stop_codon	6197..6199(-)		WP_011254487.1	helix-turn-helix domain-containing protein	100.0	81.9	90.5
MGA_623	LOCUS_05830	sequence090:17457..17813(-)	partial			WP_075917325.1	translation initiation factor IF-3	92.4	61.6	98.2
MGA_624	LOCUS_05840	sequence090:18181..19455(-)	internal_stop_codon	19471..19473(-)		WP_003645241.1	aryl-sulfate sulfotransferase	100.0	76.0	40.1
MGA_634	LOCUS_05910	sequence095:6..713(-)	partial			WP_003547033.1	50S ribosomal protein L11 methyltransferase	97.0	72.3	84.6
MGA_640	LOCUS_05950	sequence099:315..797(+)	frameshift		270	WP_003548666.1	glycosyl hydrolase family 8	96.2	41.2	70.1
MGA_641	LOCUS_05960	sequence099:794..1120(-)	frameshift		1112	WP_003550024.1	PepSY domain-containing protein	97.2	54.0	44.0
MGA_643	LOCUS_05980	sequence100:19..249(-)	frameshift		443,277	WP_011254182.1	MFS transporter	98.7	15.4	77.3
MGA_644	LOCUS_05990	sequence100:611..847(-)	frameshift		442,628	WP_011254182.1	MFS transporter	93.6	15.0	94.5
MGA_647	LOCUS_06010	sequence101:701..994(-)	partial			WP_011673938.1	TetR/AcrR family transcriptional regulator	60.8	32.2	40.7
MGA_649	LOCUS_06030	sequence101:1718..2347(-)	frameshift,internal_stop_codon	1658..1660(-),1775..1777(-)	1789	WP_003550052.1	hypothetical protein	83.7	63.2	27.7
MGA_653	LOCUS_06070	sequence101:4616..5833(+)	frameshift		5824	WP_007058870.1	DEAD/DEAH box helicase	98.3	30.8	44.7
MGA_662	LOCUS_06160	sequence101:14870..15496(+)	frameshift		14895	WP_003547489.1	YoaK family protein	86.1	77.0	82.4
MGA_664	LOCUS_06180	sequence101:17698..17913(+)	frameshift		17952,17883	WP_011254350.1	GH25 family lysozyme	91.5	16.5	64.6
MGA_665	LOCUS_06190	sequence101:17977..18288(+)	frameshift,internal_stop_codon	18287..18289(+)	17952,17883	WP_011254350.1	GH25 family lysozyme	100.0	27.0	88.3
MGA_667	LOCUS_06210	sequence101:18394..18660(+)	frameshift,internal_stop_codon	18286..18288(+)	18633	WP_011254350.1	GH25 family lysozyme	92.0	20.9	76.5
MGA_668	LOCUS_06220	sequence101:18642..18845(+)	frameshift		18633	WP_011254350.1	GH25 family lysozyme	100.0	17.5	79.1
MGA_674	LOCUS_06280	sequence102:999..1322(-)	partial			WP_003549308.1	AAC(3) family N-acetyltransferase	99.1	38.7	41.1
MGA_676	LOCUS_06290	sequence103:959..1303(-)	frameshift,internal_stop_codon	959..961(-)	853	WP_117118503.1	IS3 family transposase	99.1	26.2	51.3
MGA_681	LOCUS_06320	sequence106:77..199(-)	frameshift,internal_stop_codon	261..263(-)	203	WP_003548053.1	hypothetical protein	97.5	39.8	66.7
MGA_695	LOCUS_06410	sequence112:705..1337(+)	partial			WP_011254603.1	ABC transporter ATP-binding protein	93.8	36.7	26.4
MGA_700	LOCUS_06460	sequence112:5778..6083(-)	frameshift		6238	WP_011254043.1	DNA-3-methyladenine glycosylase	99.0	47.6	89.0
MGA_701	LOCUS_06470	sequence112:6080..6412(-)	frameshift		6238	WP_011254043.1	DNA-3-methyladenine glycosylase	52.7	27.6	82.8
MGA_722	LOCUS_06680	sequence112:24107..24724(+)	internal_stop_codon	24722..24724(+)		WP_011254052.1	MerR family transcriptional regulator	100.0	83.3	78.7
MGA_773	LOCUS_07170	sequence118:305..808(+)	frameshift		778	WP_116878224.1	IS982 family transposase	94.0	58.3	44.6
MGA_774	LOCUS_07180	sequence119:81..869(+)	partial			WP_011254403.1	ABC transporter transmembrane domain-containing protein	94.3	42.0	87.0
MGA_780	LOCUS_07210	sequence123:15..563(-)	partial			WP_003546873.1	aspartate kinase	94.5	38.1	75.0
MGA_806	LOCUS_07460	sequence126:317..550(+)	partial			WP_011254026.1	IS1182 family transposase	98.7	13.4	72.4
MGA_808	LOCUS_07470	sequence127:63..383(+)	frameshift		329	WP_103152732.1	IS5 family transposase	92.5	36.3	87.8
MGA_835	LOCUS_07680	sequence135:11281..11874(-)	frameshift		11862,12030	WP_003549107.1	ion channel	98.0	69.1	75.4
MGA_838	LOCUS_07710	sequence135:13367..13846(-)	frameshift		13859	WP_003549103.1	AEC family transporter	100.0	41.0	76.4
MGA_839	LOCUS_07720	sequence135:13851..14306(-)	frameshift,internal_stop_codon	14331..14333(-)	13865	WP_003549103.1	AEC family transporter	98.0	37.7	78.4
MGA_840	LOCUS_07730	sequence135:14331..14543(-)	internal_stop_codon	14331..14333(-)		WP_003549103.1	AEC family transporter	100.0	17.8	91.4
MGA_850	LOCUS_07810	sequence138:418..555(+)	frameshift		153,244	WP_011254138.1	deoxyribose-phosphate aldolase	97.8	18.6	88.6
MGA_853	LOCUS_07820	sequence140:108..437(-)	partial			WP_000959952.1	AraC family ligand binding domain-containing protein	81.7	31.1	47.2
MGA_863	LOCUS_07870	sequence146:6248..7204(+)	partial			WP_005808317.1	IS4-like element ISDha5 family transposase	51.9	38.9	34.3
MGA_864	LOCUS_07880	sequence146:7358..8218(-)	partial			WP_003548280.1	S8 family serine peptidase	51.4	9.0	36.0
MGA_865	LOCUS_07890	sequence146:8247..9803(-)	frameshift		8249	WP_012775266.1	bifunctional metallophosphatase/5'-nucleotidase	82.8	63.5	44.6
MGA_869	LOCUS_07930	sequence146:14365..14922(+)	frameshift,internal_stop_codon	14245..14247(+)	14916	WP_003642297.1	amidohydrolase	97.3	45.1	71.7
MGA_870	LOCUS_07940	sequence146:15000..15392(+)	frameshift		14916	WP_011675074.1	amidohydrolase	98.5	32.1	50.0
MGA_875	LOCUS_07990	sequence146:19404..19553(+)	frameshift		19587,19612,19502	WP_011254382.1	FAD-dependent oxidoreductase	71.4	7.9	88.6
MGA_876	LOCUS_08000	sequence147:217..387(+)	partial			WP_011254324.1	branched-chain amino acid transport system II carrier protein	60.7	7.5	67.6
MGA_885	LOCUS_08030	sequence155:146..367(+)	partial			WP_003562902.1	hypothetical protein	80.8	72.5	50.8
MGA_889	LOCUS_08050	sequence157:631..1419(-)	frameshift,internal_stop_codon	1587..1589(-)	1439	WP_008783193.1	ATP-binding protein	88.2	48.3	36.3
MGA_926	LOCUS_08310	sequence168:2715..3056(-)	internal_stop_codon	3225..3227(-)		WP_010906099.1	carbamate kinase	95.6	34.6	53.2
MGA_927	LOCUS_08320	sequence168:3225..3647(-)	internal_stop_codon	3225..3227(-)		WP_003721662.1	carbamate kinase	99.3	44.4	55.4
MGA_928	LOCUS_08330	sequence168:3842..4450(-)	frameshift,internal_stop_codon	3841..3843(-)	4572	WP_004254507.1	ornithine carbamoyltransferase	100.0	57.3	71.4
MGA_929	LOCUS_08340	sequence168:4698..4970(-)	frameshift,internal_stop_codon	5082..5084(-)	5247	WP_004254504.1	arginine deiminase	98.9	21.7	77.5
MGA_930	LOCUS_08350	sequence168:5082..5252(-)	frameshift,internal_stop_codon	5082..5084(-)	5247	WP_004254504.1	arginine deiminase	96.4	13.7	64.3
MGA_931	LOCUS_08360	sequence168:5200..5610(-)	frameshift,internal_stop_codon	5742..5744(-),5082..5084(-)	5247,5630,5623	WP_002288439.1	arginine deiminase	88.2	29.3	55.0
MGA_932	LOCUS_08370	sequence168:5742..5927(-)	frameshift,internal_stop_codon	5742..5744(-)	5639	WP_002288439.1	arginine deiminase	91.8	13.7	71.4
MGA_936	LOCUS_08410	sequence168:10084..10650(+)	frameshift,internal_stop_codon	10081..10083(+)	10563	WP_003547770.1	cardiolipin synthase	85.1	32.3	80.6
MGA_937	LOCUS_08420	sequence168:10797..10964(+)	frameshift		10962,10563	WP_003547770.1	cardiolipin synthase	100.0	11.1	76.4
MGA_938	LOCUS_08430	sequence168:10888..11445(+)	frameshift		10961	WP_003547770.1	cardiolipin synthase	86.5	32.3	90.6
MGA_945	LOCUS_08500	sequence168:19184..19399(+)	frameshift		19166	WP_003548967.1	hypothetical protein	87.3	59.0	61.3
MGA_954	LOCUS_08510	sequence177:72..290(+)	frameshift		275	WP_003546143.1	phosphoenolpyruvate carboxykinase (ATP)	95.8	12.5	95.7
MGA_955	LOCUS_08520	sequence177:367..975(+)	frameshift,internal_stop_codon	973..975(+)	275	WP_003546143.1	phosphoenolpyruvate carboxykinase (ATP)	100.0	47.6	73.4
MGA_956	LOCUS_08530	sequence177:994..1521(+)	internal_stop_codon	973..975(+)		WP_003546143.1	phosphoenolpyruvate carboxykinase (ATP)	100.0	31.7	94.3
MGA_962	LOCUS_08590	sequence177:5078..5962(-)	frameshift		5936,5942	WP_011102047.1	MBG domain-containing protein	82.7	12.4	28.2
MGA_964	LOCUS_08610	sequence177:6284..6580(+)	frameshift,internal_stop_codon	6756..6758(+),6578..6580(+)	6646	WP_003547458.1	APC family permease	100.0	21.5	60.2
MGA_969	LOCUS_08660	sequence177:14107..14490(-)	internal_stop_codon	14518..14520(-)		WP_011254161.1	maltose O-acetyltransferase	96.1	81.3	81.1
MGA_970	LOCUS_08670	sequence177:14783..15226(+)	frameshift		15178	WP_011254160.1	LysR family transcriptional regulator	89.1	44.7	90.1
MGA_971	LOCUS_08680	sequence177:15226..15603(+)	frameshift		15178	WP_011254160.1	LysR family transcriptional regulator	100.0	42.7	75.2
MGA_976	LOCUS_08730	sequence177:18900..19097(-)	partial			WP_003548136.1	alpha-galactosidase	95.4	8.5	46.8
MGA_981	LOCUS_08780	sequence178:3812..4513(+)	internal_stop_codon	3758..3760(+)		WP_003550089.1	helix-turn-helix transcriptional regulator	100.0	81.8	71.2
MGA_999	LOCUS_08960	sequence179:6733..7551(+)	partial			WP_011101976.1	choice-of-anchor A family protein	71.0	23.3	32.7
MGA_1014	LOCUS_09100	sequence180:1159..1476(-)	frameshift,internal_stop_codon	1158..1160(-)	1652	WP_011674120.1	ISL3 family transposase	100.0	25.1	92.4
MGA_1015	LOCUS_09110	sequence180:2579..2959(-)	partial			WP_000170424.1	recombinase family protein	97.6	65.8	55.2
MGA_1018	LOCUS_09140	sequence180:4014..4994(+)	partial			WP_003243952.1	pyrimidine-nucleoside phosphorylase	99.4	74.6	59.0
MGA_1060	LOCUS_09560	sequence181:22722..22886(+)	frameshift		22865	WP_011254419.1	ASCH domain-containing protein	88.9	33.1	64.6
MGA_1061	LOCUS_09570	sequence181:22900..23163(+)	frameshift		22865	WP_011254419.1	ASCH domain-containing protein	100.0	59.3	81.6
MGA_1088	LOCUS_09840	sequence182:37..369(+)	partial			WP_011254602.1	acetate kinase	100.0	28.1	84.5
MGA_1097	LOCUS_09930	sequence182:12023..12508(+)	partial			WP_011101323.1	MucBP domain-containing protein	81.4	13.0	54.2
MGA_1098	LOCUS_09940	sequence182:12664..13353(+)	partial			WP_011101323.1	MucBP domain-containing protein	99.6	19.5	42.6
MGA_1099	LOCUS_09950	sequence182:13851..14258(+)	partial			WP_011674178.1	MucBP domain-containing protein	97.8	13.5	51.1
MGA_1100	LOCUS_09960	sequence182:14453..14893(-)	partial			WP_003569078.1	IS3 family transposase	47.9	25.4	81.4
MGA_1107	LOCUS_10030	sequence183:28..153(-)	frameshift		163	WP_011102188.1	LysR family transcriptional regulator	97.6	12.9	80.0
MGA_1109	LOCUS_10050	sequence183:487..1137(+)	frameshift,internal_stop_codon	1123..1125(+)	1080	WP_003703273.1	shikimate dehydrogenase	90.3	67.0	72.3
MGA_1110	LOCUS_10060	sequence183:1137..1295(+)	frameshift,internal_stop_codon	1123..1125(+)	1080	WP_003643073.1	shikimate dehydrogenase	96.2	17.0	68.0
MGA_1125	LOCUS_10210	sequence184:1475..1717(+)	frameshift,internal_stop_codon	1333..1335(+)	1482,1687	WP_011254010.1	C69 family dipeptidase	83.8	14.4	92.5
MGA_1126	LOCUS_10220	sequence184:1747..2202(+)	frameshift,internal_stop_codon	2201..2203(+)	1482,1687	WP_011254010.1	C69 family dipeptidase	99.3	32.2	84.0
MGA_1127	LOCUS_10230	sequence184:2323..2574(+)	internal_stop_codon	2200..2202(+)		WP_011254010.1	C69 family dipeptidase	100.0	23.6	60.0
MGA_1141	LOCUS_10370	sequence184:14719..14988(+)	internal_stop_codon	14986..14988(+)		WP_025079808.1	YjjG family noncanonical pyrimidine nucleotidase	100.0	37.9	82.0
MGA_1142	LOCUS_10380	sequence184:15022..15426(+)	internal_stop_codon	14986..14988(+)		WP_025079808.1	YjjG family noncanonical pyrimidine nucleotidase	100.0	57.0	93.3
MGA_1155	LOCUS_10500	sequence185:8055..8477(+)	partial			WP_010939860.1	DUF438 domain-containing protein	85.0	22.8	33.6
MGA_1168	LOCUS_10630	sequence186:6967..7638(-)	internal_stop_codon	7654..7656(-)		WP_003546359.1	hypothetical protein	96.9	84.1	50.7
MGA_1175	LOCUS_10700	sequence186:15775..16062(-)	frameshift		16040,16206	WP_003546337.1	aldo/keto reductase	92.6	31.7	85.2
MGA_1176	LOCUS_10710	sequence186:16011..16256(-)	frameshift		16040,16206	WP_003546337.1	aldo/keto reductase	74.1	21.6	91.7
MGA_1177	LOCUS_10720	sequence186:16177..16455(-)	frameshift		16040,16206	WP_003546337.1	aldo/keto reductase	90.2	29.9	83.1
MGA_1184	LOCUS_10790	sequence187:4516..4689(+)	internal_stop_codon	4687..4689(+)		WP_003547084.1	ECF transporter S component	100.0	24.9	78.9
MGA_1185	LOCUS_10800	sequence187:4714..5205(+)	internal_stop_codon	4687..4689(+)		WP_003547084.1	ECF transporter S component	99.4	70.7	77.2
MGA_1226	LOCUS_11200	sequence189:10776..11051(+)	internal_stop_codon	11049..11051(+),10749..10751(+)		WP_011254626.1	ABC transporter ATP-binding protein/permease	100.0	12.1	86.2
MGA_1227	LOCUS_11210	sequence189:11067..12965(+)	internal_stop_codon	11049..11051(+)		WP_011254626.1	ABC transporter ATP-binding protein/permease	100.0	81.3	81.2
MGA_1244	LOCUS_11380	sequence191:1..990(+)	partial			WP_003548886.1	SLAP domain-containing protein	95.7	57.0	62.8
MGA_1246	LOCUS_11400	sequence191:2238..2684(+)	frameshift		2648	WP_011254084.1	ROK family protein	87.8	43.0	76.2
MGA_1247	LOCUS_11410	sequence191:2741..3016(+)	frameshift,internal_stop_codon	3015..3017(+)	2648	WP_011254084.1	ROK family protein	98.9	29.5	81.1
MGA_1248	LOCUS_11420	sequence191:3234..3407(-)	partial			WP_003548898.1	hypothetical protein	100.0	61.3	54.4
MGA_1255	LOCUS_11490	sequence191:9561..9923(+)	internal_stop_codon	9525..9527(+)		WP_002355232.1	HAD family phosphatase	79.2	41.7	37.9
MGA_1264	LOCUS_11580	sequence192:6845..7237(-)	partial			WP_003546570.1	glucose-1-phosphate adenylyltransferase	45.4	15.5	61.0
MGA_1279	LOCUS_11730	sequence192:22824..23807(-)	internal_stop_codon	22824..22826(-)		WP_003546527.1	helix-turn-helix domain-containing protein	85.6	74.9	73.7
MGA_1287	LOCUS_11810	sequence192:31719..31880(-)	internal_stop_codon	31908..31910(-)		WP_003546509.1	PTS glucitol/sorbitol transporter subunit IIA	100.0	42.1	96.2
MGA_1288	LOCUS_11820	sequence192:31908..32099(-)	internal_stop_codon	31908..31910(-)		WP_003546509.1	PTS glucitol/sorbitol transporter subunit IIA	100.0	50.0	87.3
MGA_1295	LOCUS_11880	sequence193:2913..3563(-)	frameshift		3619	WP_003549473.1	ABC transporter permease	100.0	67.9	80.6
MGA_1296	LOCUS_11890	sequence193:3557..3868(-)	frameshift		3619	WP_003549473.1	ABC transporter permease	95.1	34.0	55.6
MGA_1297	LOCUS_11900	sequence193:3865..4248(-)	partial			WP_003549477.1	ABC transporter permease	94.5	33.7	62.8
MGA_1304	LOCUS_11970	sequence193:8491..9144(+)	frameshift		9138	WP_003548032.1	aspartate carbamoyltransferase catalytic subunit	100.0	68.2	84.3
MGA_1305	LOCUS_11980	sequence193:9158..9448(+)	frameshift		9141	WP_003548032.1	aspartate carbamoyltransferase catalytic subunit	100.0	30.2	86.5
MGA_1308	LOCUS_12010	sequence193:11803..14379(+)	frameshift		14376	WP_011254441.1	carbamoyl-phosphate synthase large subunit	100.0	80.8	90.0
MGA_1309	LOCUS_12020	sequence193:14382..14990(+)	frameshift		14376	WP_011254441.1	carbamoyl-phosphate synthase large subunit	100.0	19.0	91.6
MGA_1318	LOCUS_12110	sequence194:8338..8994(-)	partial			WP_011861613.1	ABC-F type ribosomal protection protein	91.7	39.8	30.8
MGA_1319	LOCUS_12120	sequence194:9044..9631(-)	frameshift		9082	WP_002287458.1	ABC-F type ribosomal protection protein Msr(C)	99.5	43.7	30.9
MGA_1322	LOCUS_12150	sequence194:11235..11735(+)	frameshift		11127	WP_003549596.1	hypothetical protein	100.0	77.9	41.6
MGA_1325	LOCUS_12180	sequence194:13446..13733(+)	frameshift		13709	WP_011254605.1	C40 family peptidase	92.6	54.4	80.9
MGA_1330	LOCUS_12230	sequence195:2632..3186(+)	internal_stop_codon	3184..3186(+)		WP_003549091.1	1-deoxy-D-xylulose-5-phosphate synthase	100.0	31.7	90.8
MGA_1331	LOCUS_12240	sequence195:3211..3843(+)	frameshift,internal_stop_codon	3184..3186(+)	3840	WP_003549091.1	1-deoxy-D-xylulose-5-phosphate synthase	100.0	36.2	83.3
MGA_1332	LOCUS_12250	sequence195:3840..4373(+)	frameshift		3840	WP_003549091.1	1-deoxy-D-xylulose-5-phosphate synthase	100.0	30.5	80.2
MGA_1344	LOCUS_12370	sequence196:2644..3180(-)	frameshift		3193	WP_003549250.1	amino acid permease	99.4	36.9	84.2
MGA_1345	LOCUS_12380	sequence196:3128..3469(-)	frameshift		3193	WP_003549250.1	amino acid permease	81.4	19.2	93.5
MGA_1349	LOCUS_12420	sequence196:6975..7280(-)	frameshift		7272	WP_011254015.1	Cof-type HAD-IIB family hydrolase	96.0	35.7	88.7
MGA_1350	LOCUS_12430	sequence196:7267..7794(-)	frameshift		7272	WP_011254015.1	Cof-type HAD-IIB family hydrolase	100.0	64.3	81.7
MGA_1351	LOCUS_12440	sequence196:7914..9410(-)	frameshift		9451	WP_011254014.1	TetM/TetW/TetO/TetS family tetracycline resistance ribosomal protection protein	99.4	77.5	73.7
MGA_1352	LOCUS_12450	sequence196:9395..9844(-)	frameshift		9451	WP_011254014.1	TetM/TetW/TetO/TetS family tetracycline resistance ribosomal protection protein	93.3	21.8	77.0
MGA_1354	LOCUS_12470	sequence196:11208..11801(-)	internal_stop_codon	11958..11960(-)		WP_014565478.1	SLAP domain-containing protein	87.8	44.3	60.3
MGA_1355	LOCUS_12480	sequence196:11958..12329(-)	internal_stop_codon	11958..11960(-)		WP_014565478.1	SLAP domain-containing protein	99.2	32.9	59.7
MGA_1360	LOCUS_12530	sequence197:5603..6196(+)	frameshift		6322,6118	WP_001106642.1	ATP-binding protein	86.8	42.3	53.8
MGA_1361	LOCUS_12540	sequence197:6118..6387(+)	frameshift		6325,6118	WP_001106642.1	ATP-binding protein	78.7	17.4	52.9
MGA_1362	LOCUS_12550	sequence197:6411..6836(+)	frameshift		6324	WP_001106642.1	ATP-binding protein	98.6	34.6	59.0
MGA_1364	LOCUS_12570	sequence197:7340..7495(+)	frameshift		7459	WP_003546995.1	class II fumarate hydratase	78.4	8.6	95.0
MGA_1367	LOCUS_12600	sequence197:10486..10746(+)	frameshift		10692,10695	WP_003546999.1	mucus-binding protein	77.9	13.2	40.3
MGA_1368	LOCUS_12610	sequence197:10743..11429(+)	frameshift,internal_stop_codon	11717..11719(+)	11400,10692,11381,10695	WP_003546999.1	mucus-binding protein	95.2	42.7	51.8
MGA_1369	LOCUS_12620	sequence197:11416..11718(+)	frameshift,internal_stop_codon	11716..11718(+)	11766,11399	WP_003546999.1	mucus-binding protein	100.0	19.7	33.0
MGA_1370	LOCUS_12630	sequence197:11766..11933(+)	frameshift,internal_stop_codon	11716..11718(+)	11766	WP_003546999.1	mucus-binding protein	98.2	10.6	66.7
MGA_1371	LOCUS_12640	sequence197:11968..12786(+)	partial			WP_011254524.1	Rib/alpha-like domain-containing protein	61.4	9.7	33.7
MGA_1381	LOCUS_12730	sequence198:11306..11941(-)	partial			WP_087235334.1	site-specific integrase	97.2	53.0	51.9
MGA_1382	LOCUS_12740	sequence198:11959..12462(+)	frameshift		12450	WP_001153836.1	IS30 family transposase	85.6	40.3	30.1
MGA_1388	LOCUS_12800	sequence199:5016..5447(+)	internal_stop_codon	5445..5447(+)		WP_003393199.1	ATP-dependent helicase	67.8	16.4	43.3
MGA_1389	LOCUS_12810	sequence199:5556..6782(+)	partial			WP_003393199.1	ATP-dependent helicase	97.3	68.5	30.7
MGA_1392	LOCUS_12840	sequence199:11636..12220(+)	partial			WP_010922656.1	restriction endonuclease subunit S	97.4	47.4	63.0
MGA_1393	LOCUS_12850	sequence200:108..290(-)	internal_stop_codon	303..305(-)		WP_011254438.1	helix-turn-helix domain-containing protein	86.7	40.9	63.5
MGA_1394	LOCUS_12860	sequence200:303..506(-)	internal_stop_codon	303..305(-)		WP_011254438.1	helix-turn-helix domain-containing protein	94.0	49.6	60.3
MGA_1398	LOCUS_12890	sequence200:3073..3786(+)	partial			WP_003546965.1	choloylglycine hydrolase	97.9	71.4	78.4
MGA_1399	LOCUS_12900	sequence200:3774..3971(+)	partial			WP_003546965.1	choloylglycine hydrolase	100.0	20.0	81.5
MGA_1405	LOCUS_12960	sequence200:8406..8537(+)	frameshift		8501	WP_015613346.1	ROK family protein	88.4	13.2	84.2
MGA_1406	LOCUS_12970	sequence200:8776..9267(+)	frameshift		8501	WP_015613346.1	ROK family protein	98.8	56.1	77.0
MGA_1408	LOCUS_12990	sequence200:10820..11758(+)	partial			WP_011254281.1	PTS sugar transporter subunit IIC	97.1	63.8	74.3
MGA_1413	LOCUS_13040	sequence201:2577..2858(-)	internal_stop_codon	2577..2579(-)		WP_003547855.1	uracil-DNA glycosylase	100.0	42.5	82.8
MGA_1420	LOCUS_13110	sequence201:7253..7975(-)	partial			WP_011674977.1	IS30 family transposase	94.2	67.2	50.2
MGA_1422	LOCUS_13130	sequence201:9829..10116(-)	frameshift,internal_stop_codon	10167..10169(-)	10130	WP_003547879.1	MarR family winged helix-turn-helix transcriptional regulator	98.9	70.4	63.2
MGA_1424	LOCUS_13150	sequence202:174..560(-)	internal_stop_codon	561..563(-)		WP_011254469.1	galactose mutarotase	100.0	38.7	67.2
MGA_1425	LOCUS_13160	sequence202:561..1169(-)	internal_stop_codon	561..563(-)		WP_011254469.1	galactose mutarotase	100.0	61.0	76.7
MGA_1430	LOCUS_13210	sequence202:4804..5022(+)	frameshift		4959	WP_003705589.1	phosphate-starvation-inducible protein PsiE	69.4	34.2	58.0
MGA_1431	LOCUS_13220	sequence202:5247..5681(-)	internal_stop_codon	5247..5249(-)		WP_188891678.1	amidohydrolase family protein	100.0	35.9	91.0
MGA_1432	LOCUS_13230	sequence202:5684..6232(-)	partial			WP_188891678.1	amidohydrolase family protein	94.5	42.9	89.0
MGA_1433	LOCUS_13240	sequence202:6245..6670(-)	frameshift		6768	WP_154881464.1	peptide ABC transporter substrate-binding protein	100.0	26.3	71.8
MGA_1434	LOCUS_13250	sequence202:6739..7041(-)	frameshift		7129,6771	WP_154881464.1	peptide ABC transporter substrate-binding protein	94.0	17.4	68.1
MGA_1435	LOCUS_13260	sequence202:7061..7402(-)	frameshift		7416,7128	WP_154881464.1	peptide ABC transporter substrate-binding protein	91.2	19.1	68.0
MGA_1436	LOCUS_13270	sequence202:7369..7866(-)	frameshift		7416,7128	WP_154881464.1	peptide ABC transporter substrate-binding protein	90.9	27.4	69.3
MGA_1437	LOCUS_13280	sequence202:8399..8800(+)	internal_stop_codon	8798..8800(+)		WP_010922164.1	bifunctional metallophosphatase/5'-nucleotidase	52.6	10.4	50.0
MGA_1438	LOCUS_13290	sequence202:8831..10273(+)	internal_stop_codon	8798..8800(+)		WP_012775266.1	bifunctional metallophosphatase/5'-nucleotidase	99.4	68.1	44.2
MGA_1440	LOCUS_13310	sequence203:1..1003(+)	partial			WP_011254403.1	ABC transporter transmembrane domain-containing protein	97.3	55.6	84.4
MGA_1468	LOCUS_13590	sequence204:397..852(+)	internal_stop_codon	850..852(+),391..393(+)		WP_011460717.1	IS4 family transposase	98.7	34.1	33.6
MGA_1469	LOCUS_13600	sequence204:901..1485(+)	internal_stop_codon	850..852(+)		WP_011460717.1	IS4 family transposase	95.9	40.1	31.0
MGA_1483	LOCUS_13730	sequence206:8..1081(-)	partial			WP_011254470.1	beta-galactosidase	97.5	52.0	86.5
MGA_1485	LOCUS_13750	sequence206:3413..4033(-)	frameshift		4062	WP_011254471.1	PTS sugar transporter subunit IIA	100.0	32.2	70.4
MGA_1486	LOCUS_13760	sequence206:4012..4536(-)	frameshift,internal_stop_codon	4555..4557(-)	4062	WP_011254471.1	PTS sugar transporter subunit IIA	98.9	27.1	80.3
MGA_1487	LOCUS_13770	sequence206:4555..4884(-)	frameshift,internal_stop_codon	4554..4556(-),5055..5057(-)	4889,5118	WP_011254471.1	PTS sugar transporter subunit IIA	100.0	17.1	80.7
MGA_1488	LOCUS_13780	sequence206:5098..5319(-)	frameshift,internal_stop_codon	5055..5057(-)	4889,5118	WP_011254471.1	PTS sugar transporter subunit IIA	90.4	10.3	84.8
MGA_1497	LOCUS_13870	sequence207:4146..4607(-)	partial			WP_011475831.1	IS3 family transposase	56.2	32.5	40.7
MGA_1500	LOCUS_13900	sequence207:5153..5641(-)	partial			WP_011475832.1	IS3 family transposase	94.4	66.2	30.7
MGA_1505	LOCUS_13950	sequence207:8958..9227(+)	partial			WP_003548622.1	glycerophosphodiester phosphodiesterase	51.7	7.9	58.7
MGA_1511	LOCUS_14010	sequence208:7965..10427(+)	partial			WP_000086952.1	hypothetical protein	97.3	64.0	24.3
MGA_1522	LOCUS_14120	sequence210:51..470(-)	frameshift		543	WP_158181789.1	pyridoxal phosphate-dependent aminotransferase	100.0	35.9	75.5
MGA_1523	LOCUS_14130	sequence210:526..1209(-)	frameshift		546	WP_158181789.1	pyridoxal phosphate-dependent aminotransferase	97.4	57.6	79.8
MGA_1524	LOCUS_14140	sequence210:1218..1517(-)	internal_stop_codon	1569..1571(-),1593..1595(-)		WP_003546685.1	DUF3737 family protein	99.0	33.1	70.4
MGA_1525	LOCUS_14150	sequence210:1593..1949(-)	internal_stop_codon	1569..1571(-),1593..1595(-)		WP_003546685.1	DUF3737 family protein	100.0	39.9	80.5
MGA_1528	LOCUS_14180	sequence210:5003..5413(-)	frameshift		5059	WP_003546679.1	ComGF family competence protein	98.5	74.3	56.8
MGA_1537	LOCUS_14270	sequence211:2..214(+)	partial			WP_003547129.1	sodium:proton antiporter	88.6	11.6	87.1
MGA_1548	LOCUS_14380	sequence212:1683..1904(-)	internal_stop_codon	1917..1919(-)		WP_003548485.1	mucus-binding protein	89.0	10.1	67.7
MGA_1550	LOCUS_14400	sequence212:2185..2520(-)	frameshift,internal_stop_codon	1917..1919(-)	2497,2482,2241,2488,2238	WP_011254318.1	YSIRK-type signal peptide-containing protein	77.5	3.9	42.7
MGA_1552	LOCUS_14420	sequence212:2874..4751(-)	frameshift,internal_stop_codon	4842..4844(-),2810..2812(-)	2876	WP_011254524.1	Rib/alpha-like domain-containing protein	100.0	31.7	36.9
MGA_1554	LOCUS_14440	sequence212:6369..8924(-)	partial			WP_003548049.1	YSIRK-type signal peptide-containing protein	10.8	2.3	35.6
MGA_1562	LOCUS_14510	sequence213:3955..4197(+)	frameshift		4173	WP_011475897.1	RNA-guided endonuclease TnpB family protein	66.2	12.5	47.2
MGA_1563	LOCUS_14520	sequence213:4470..5282(+)	partial			WP_011476585.1	RNA-guided endonuclease TnpB family protein	99.6	62.6	58.4
MGA_1613	LOCUS_15010	sequence216:8236..9060(-)	internal_stop_codon	9202..9204(-)		WP_014565583.1	NAD(P)/FAD-dependent oxidoreductase	100.0	82.8	77.4
MGA_1615	LOCUS_15030	sequence217:409..552(+)	frameshift,internal_stop_codon	550..552(+),703..705(+)	564	WP_003546429.1	nitroreductase	100.0	21.6	89.4
MGA_1616	LOCUS_15040	sequence217:570..704(+)	frameshift,internal_stop_codon	550..552(+),703..705(+)	564	WP_003546429.1	nitroreductase	100.0	20.2	68.2
MGA_1617	LOCUS_15050	sequence217:726..1064(+)	frameshift,internal_stop_codon	550..552(+),703..705(+)	564	WP_003546429.1	nitroreductase	100.0	51.4	82.1
MGA_1620	LOCUS_15080	sequence217:3298..4203(-)	internal_stop_codon	3298..3300(-),4210..4212(-)		WP_011254206.1	amino acid permease	100.0	69.4	84.7
MGA_1621	LOCUS_15090	sequence217:4210..4473(-)	internal_stop_codon	4210..4212(-)		WP_011254206.1	amino acid permease	100.0	20.0	92.0
MGA_1627	LOCUS_15150	sequence218:4..240(-)	partial			WP_003549730.1	bacteriocin immunity protein	88.5	73.6	47.8
MGA_1628	LOCUS_15160	sequence218:233..571(-)	frameshift		672,572	WP_003549809.1	L-lactate permease	98.2	21.8	90.0
MGA_1629	LOCUS_15170	sequence218:655..1281(-)	frameshift,internal_stop_codon	1348..1350(-)	566,678	WP_003549809.1	L-lactate permease	97.6	41.1	73.4
MGA_1630	LOCUS_15180	sequence218:1348..1494(-)	internal_stop_codon	1348..1350(-)		WP_003549809.1	L-lactate permease	100.0	9.5	93.8
MGA_1672	LOCUS_15590	sequence222:3871..4158(-)	frameshift		3888	WP_011254274.1	Rgg/GadR/MutR family transcriptional regulator	98.9	37.1	40.0
MGA_1675	LOCUS_15620	sequence222:6190..6966(+)	frameshift,internal_stop_codon	6965..6967(+),6179..6181(+)	6178	WP_011254020.1	glycosyltransferase family 8 protein	100.0	81.9	84.1
MGA_1684	LOCUS_15700	sequence223:5956..6411(-)	internal_stop_codon	6517..6519(-)		WP_003548812.1	pyroglutamyl-peptidase I	98.0	74.0	77.7
MGA_1687	LOCUS_15730	sequence223:8699..8878(+)	frameshift		8451	WP_003548799.1	hypothetical protein	93.2	20.8	83.6
MGA_1698	LOCUS_15840	sequence224:7665..8228(+)	frameshift		8210	WP_011254067.1	cation:proton antiporter	97.3	29.8	82.4
MGA_1699	LOCUS_15850	sequence224:8239..8631(+)	frameshift		8213	WP_011254067.1	cation:proton antiporter	90.0	19.1	89.7
MGA_1723	LOCUS_16090	sequence225:21417..21800(+)	frameshift,internal_stop_codon	21799..21801(+)	21411	WP_003546647.1	PRD domain-containing protein	99.2	46.1	62.0
MGA_1724	LOCUS_16100	sequence225:21801..22208(+)	internal_stop_codon	21798..21800(+)		WP_003546647.1	PRD domain-containing protein	99.3	47.9	70.9
MGA_1726	LOCUS_16120	sequence225:24405..25274(+)	frameshift		25250,25275,25510	WP_003546652.1	family 1 glycosylhydrolase	100.0	58.9	85.8
MGA_1727	LOCUS_16130	sequence225:25256..25534(+)	frameshift		25275,25253,25510	WP_003546652.1	family 1 glycosylhydrolase	85.9	16.1	82.3
MGA_1728	LOCUS_16140	sequence225:25534..25881(+)	frameshift		25275,25253,25510	WP_003546652.1	family 1 glycosylhydrolase	99.1	23.2	81.6
MGA_1730	LOCUS_16160	sequence225:27182..28159(-)	frameshift		27253,28310	WP_003546656.1	APC family permease	93.2	56.0	86.8
MGA_1731	LOCUS_16170	sequence225:28197..28592(-)	frameshift		28310	WP_003546656.1	APC family permease	72.5	17.6	97.9
MGA_1733	LOCUS_16180	sequence226:492..722(+)	frameshift		665	WP_011254296.1	DedA family protein	76.3	28.4	81.0
MGA_1734	LOCUS_16190	sequence226:655..1104(+)	frameshift		665	WP_011254296.1	DedA family protein	99.3	72.5	77.7
MGA_1736	LOCUS_16210	sequence226:2651..2932(-)	frameshift		2971,2989	WP_011254294.1	2-hydroxyacid dehydrogenase family protein	100.0	29.0	78.5
MGA_1737	LOCUS_16220	sequence226:2978..3496(-)	frameshift		3489,2970,2988	WP_011254294.1	2-hydroxyacid dehydrogenase family protein	97.1	52.0	83.2
MGA_1738	LOCUS_16230	sequence226:3487..3615(-)	frameshift		3489	WP_011254294.1	2-hydroxyacid dehydrogenase family protein	100.0	13.1	73.8
MGA_1739	LOCUS_16240	sequence226:3679..3969(-)	internal_stop_codon	3973..3975(-)		WP_003547047.1	sugar-phosphatase	96.9	34.4	86.0
MGA_1740	LOCUS_16250	sequence226:3973..4491(-)	internal_stop_codon	3973..3975(-)		WP_003547047.1	sugar-phosphatase	100.0	63.7	83.7
MGA_1759	LOCUS_16430	sequence228:4395..4715(-)	frameshift		4740	WP_003546793.1	penicillin-binding protein	100.0	14.7	72.6
MGA_1760	LOCUS_16440	sequence228:4726..6543(-)	frameshift		4740	WP_003546793.1	penicillin-binding protein	99.5	83.8	88.7
MGA_1764	LOCUS_16480	sequence229:108..260(-)	frameshift		242,389	WP_021721377.1	flavodoxin	84.0	19.0	88.1
MGA_1765	LOCUS_16490	sequence229:372..755(-)	frameshift		242,389	WP_021721377.1	flavodoxin	96.1	55.2	89.3
MGA_1774	LOCUS_16580	sequence230:115..615(-)	frameshift,internal_stop_codon	700..702(-)	727	WP_011254534.1	ABC transporter ATP-binding protein	99.4	30.9	54.5
MGA_1775	LOCUS_16590	sequence230:689..1675(-)	frameshift,internal_stop_codon	700..702(-)	727	WP_011254534.1	ABC transporter ATP-binding protein	95.4	58.6	39.3
MGA_1793	LOCUS_16760	sequence232:3721..3855(+)	frameshift		3704,3849	WP_044304031.1	oxalyl-CoA decarboxylase	90.9	6.9	90.0
MGA_1794	LOCUS_16770	sequence232:3852..4175(+)	frameshift		3704,3849,4155	WP_044304031.1	oxalyl-CoA decarboxylase	95.3	17.7	89.3
MGA_1795	LOCUS_16780	sequence232:4300..5172(+)	frameshift		5064,4154	WP_044304031.1	oxalyl-CoA decarboxylase	87.9	43.8	80.4
MGA_1796	LOCUS_16790	sequence232:5088..5429(+)	frameshift		5064	WP_044304031.1	oxalyl-CoA decarboxylase	100.0	19.4	87.6
MGA_1797	LOCUS_16800	sequence232:5429..5611(+)	internal_stop_codon	5609..5611(+)		WP_003549137.1	formyl-CoA transferase	96.7	13.0	91.4
MGA_1798	LOCUS_16810	sequence232:5624..6274(+)	frameshift,internal_stop_codon	5609..5611(+)	6294	WP_003549137.1	formyl-CoA transferase	76.9	37.5	74.9
MGA_1799	LOCUS_16820	sequence232:6387..6650(+)	frameshift		6294	WP_003549137.1	formyl-CoA transferase	96.6	18.9	91.7
MGA_1807	LOCUS_16900	sequence233:6395..6859(-)	frameshift		6882	WP_003546599.1	amino acid permease	100.0	32.2	85.7
MGA_1808	LOCUS_16910	sequence233:6766..7641(-)	frameshift		6882	WP_003546599.1	amino acid permease	96.2	59.2	82.0
MGA_1819	LOCUS_17020	sequence235:4655..5671(-)	partial			WP_012546398.1	HesA/MoeB/ThiF family protein	32.8	44.5	35.1
MGA_1860	LOCUS_17430	sequence236:22327..22698(-)	partial			WP_003548672.1	DUF805 domain-containing protein	100.0	40.1	32.8
MGA_1862	LOCUS_17450	sequence236:23413..23823(-)	frameshift		23959	WP_003549070.1	HAD hydrolase-like protein	100.0	62.1	82.4
MGA_1863	LOCUS_17460	sequence236:23942..24073(-)	frameshift		23959	WP_003549070.1	HAD hydrolase-like protein	88.4	17.4	84.2
MGA_1873	LOCUS_17560	sequence237:3572..3829(+)	frameshift		3805	WP_011026965.1	acetoin reductase	68.2	21.9	60.3
MGA_1880	LOCUS_17620	sequence238:1658..4621(+)	partial			WP_003549917.1	type I pullulanase	39.8	31.6	22.1
MGA_1882	LOCUS_17640	sequence238:5459..6076(+)	internal_stop_codon	6336..6338(+)		WP_003548592.1	helix-turn-helix transcriptional regulator	69.3	53.5	30.4
MGA_1901	LOCUS_17820	sequence241:1061..1639(+)	frameshift		1121	WP_103152732.1	IS5 family transposase	91.1	66.8	66.3
MGA_1907	LOCUS_17880	sequence242:117..482(+)	partial			WP_002387267.1	helix-turn-helix transcriptional regulator	51.2	54.9	41.9
MGA_1918	LOCUS_17990	sequence243:4304..7168(+)	partial			WP_000503026.1	non-ribosomal peptide synthetase	56.2	26.7	26.9
MGA_1920	LOCUS_18010	sequence244:2098..2466(-)	partial			WP_057811338.1	hypothetical protein	100.0	32.6	87.7
MGA_1926	LOCUS_18070	sequence244:6052..6468(+)	frameshift		6456	WP_003561810.1	IS30-like element ISLpl1 family transposase	100.0	44.7	97.1
MGA_1930	LOCUS_18100	sequence245:3612..4277(+)	partial			WP_011949153.1	methylenetetrahydrofolate reductase [NAD(P)H]	93.7	69.8	52.2
MGA_1931	LOCUS_18110	sequence245:4478..4840(-)	frameshift		4842	WP_011674639.1	IS30 family transposase	90.0	32.0	71.3
MGA_1938	LOCUS_18180	sequence246:1881..2675(-)	partial			WP_000475574.1	FtsK/SpoIIIE domain-containing protein	89.0	54.3	33.9
MGA_1961	LOCUS_18410	sequence247:15375..15569(+)	partial			WP_003564982.1	membrane protein insertion efficiency factor YidD	75.0	47.5	70.8
MGA_1979	LOCUS_18590	sequence248:1611..2042(-)	internal_stop_codon	1611..1613(-)		WP_012027861.1	hypothetical protein	93.0	58.4	30.3
MGA_1990	LOCUS_18700	sequence249:625..894(+)	partial			WP_057811338.1	hypothetical protein	91.0	21.7	67.9
MGA_1994	LOCUS_18740	sequence249:3660..4139(-)	partial			WP_011241738.1	IS3 family transposase	96.9	33.1	51.3
MGA_1997	LOCUS_18770	sequence249:6583..6903(-)	partial			WP_011673939.1	sulfite exporter TauE/SafE family protein	94.3	40.5	50.0
MGA_2000	LOCUS_18790	sequence250:774..2543(-)	frameshift		2542	WP_094324403.1	DUF262 and DUF1524 domain-containing protein	78.9	70.3	30.2
MGA_2001	LOCUS_18800	sequence250:2540..2740(-)	frameshift		2542	WP_001304007.1	DUF262 domain-containing protein	90.9	20.8	45.2
MGA_2002	LOCUS_18810	sequence250:3026..3307(-)	frameshift		3299	WP_011261873.1	VOC family protein	92.5	67.5	43.0
MGA_2011	LOCUS_18900	sequence251:2737..2898(-)	frameshift		2739,2693	WP_003546896.1	FMN-binding protein	100.0	59.6	67.9
MGA_2020	LOCUS_18990	sequence252:5731..5889(+)	internal_stop_codon	5887..5889(+)		WP_003546381.1	GntR family transcriptional regulator	100.0	21.6	92.3
MGA_2021	LOCUS_19000	sequence252:5959..6396(+)	internal_stop_codon	6394..6396(+),5887..5889(+)		WP_003546381.1	GntR family transcriptional regulator	100.0	60.2	89.7
MGA_2023	LOCUS_19010	sequence253:8..889(-)	partial			WP_011254595.1	peptide MFS transporter	98.6	58.1	86.5
MGA_2029	LOCUS_19070	sequence254:3297..3485(-)	frameshift,internal_stop_codon	3297..3299(-)	3480	WP_003547151.1	hypothetical protein	98.4	46.3	69.4
MGA_2042	LOCUS_19190	sequence256:5479..5919(-)	partial			WP_000595895.1	FtsX-like permease family protein	92.5	15.0	25.2
MGA_2044	LOCUS_19200	sequence257:35..181(-)	partial			WP_002387645.1	family 1 glycosylhydrolase	87.5	8.6	66.7