{
    "type": "genome",
    "identifier": "GCF_001435245.1",
    "organism": "Limosilactobacillus equigenerosi DSM 18793 = JCM 14505",
    "title": "Limosilactobacillus equigenerosi DSM 18793 = JCM 14505",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shanghai Majorbio",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001435245.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02369380",
        "wgs_master": "AZGC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1423742",
        "species_taxid": "417373",
        "organism_name": "Limosilactobacillus equigenerosi DSM 18793 = JCM 14505",
        "infraspecific_name": "strain=DSM 18793",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/11/06",
        "asm_name": "ASM143524v1",
        "asm_submitter": "Shanghai Majorbio",
        "gbrs_paired_asm": "GCA_001435245.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/435/245/GCF_001435245.1_ASM143524v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1599963",
        "genome_size_ungapped": "1599045",
        "gc_percent": "42.500000",
        "replicon_count": "0",
        "scaffold_count": "68",
        "contig_count": "68",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001435245.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "1618",
        "protein_coding_gene_count": "1539",
        "non_coding_gene_count": "52",
        "pubmed_id": "26415554"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-11-06",
    "dateModified": "2015-11-06",
    "datePublished": "2015-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Limosilactobacillus equigenerosi DSM 18793 = JCM 14505"
        ],
        "sample_taxid": [
            "1423742"
        ],
        "sample_host_organism": [
            "horse"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.455 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1599963",
        "Number of Sequences": "68",
        "Longest Sequences (bp)": "276580",
        "N50 (bp)": "84556",
        "Gap Ratio (%)": "0.057376",
        "GCcontent (%)": "42.7",
        "Number of CDSs": "1550",
        "Average Protein Length": "302.6",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Limosilactobacillus equigenerosi",
                "strain": "strain=DSM 18793",
                "accession": "GCA_001435245.1",
                "taxid": 417373,
                "species_taxid": 417373,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 512,
                "total_fragments": 513,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus equigenerosi",
                "strain": "strain=NRIC 0697",
                "accession": "GCA_001570685.1",
                "taxid": 417373,
                "species_taxid": 417373,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9474,
                "matched_fragments": 472,
                "total_fragments": 513,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus equigenerosi",
                "strain": "strain=JCM 14505",
                "accession": "GCA_001311375.1",
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                "species_taxid": 417373,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8921,
                "matched_fragments": 501,
                "total_fragments": 513,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus gastricus",
                "strain": "strain=DSM 16045",
                "accession": "GCA_001434365.1",
                "taxid": 227942,
                "species_taxid": 227942,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6287,
                "matched_fragments": 123,
                "total_fragments": 513,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus gorillae",
                "strain": "strain=KZ01",
                "accession": "GCA_001293735.1",
                "taxid": 1450649,
                "species_taxid": 1450649,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8643,
                "matched_fragments": 59,
                "total_fragments": 513,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus ingluviei",
                "strain": "strain=DSM 15946",
                "accession": "GCA_001435775.1",
                "taxid": 148604,
                "species_taxid": 148604,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6307,
                "matched_fragments": 72,
                "total_fragments": 513,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001311375.1",
                "gtdb_species": "s__Limosilactobacillus equigenerosi",
                "ani": 99.8921,
                "matched_fragments": 501,
                "total_fragments": 513,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001434365.1",
                "gtdb_species": "s__Limosilactobacillus gastricus",
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                "matched_fragments": 123,
                "total_fragments": 513,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.66",
                "min_intra_species_ani": "95.34",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001436025.1",
                "gtdb_species": "s__Limosilactobacillus mucosae",
                "ani": 77.8935,
                "matched_fragments": 52,
                "total_fragments": 513,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.05",
                "min_intra_species_ani": "95.70",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 22,
                "status": "-"
            },
            {
                "accession": "GCF_016901675.1",
                "gtdb_species": "s__Limosilactobacillus coleohominis",
                "ani": 77.8823,
                "matched_fragments": 57,
                "total_fragments": 513,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_001293735.1",
                "gtdb_species": "s__Limosilactobacillus gorillae",
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                "matched_fragments": 59,
                "total_fragments": 513,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001435775.1",
                "gtdb_species": "s__Limosilactobacillus ingluviei",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.51",
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                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_016900115.1",
                "gtdb_species": "s__Limosilactobacillus alvi",
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                "matched_fragments": 87,
                "total_fragments": 513,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.65",
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                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019118465.1",
                "gtdb_species": "s__Limosilactobacillus faecipullorum",
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                "matched_fragments": 73,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013694365.1",
                "gtdb_species": "s__Limosilactobacillus reuteri_E",
                "ani": 76.8506,
                "matched_fragments": 55,
                "total_fragments": 513,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "96.40",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 58,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Limosilactobacillus",
        "equigenerosi",
        "DSM",
        "18793",
        "=",
        "JCM",
        "14505"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}