{ "type": "genome", "identifier": "GCF_001435345.1", "organism": "Limosilactobacillus pontis DSM 8475", "title": "Limosilactobacillus pontis DSM 8475", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Majorbio", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001435345.1", "bioproject": "PRJNA224116", "biosample": "SAMN02369494", "wgs_master": "AZGO00000000.1", "refseq_category": "na", "taxid": "1423794", "species_taxid": "35787", "organism_name": "Limosilactobacillus pontis DSM 8475", "infraspecific_name": "strain=DSM 8475", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/06", "asm_name": "ASM143534v1", "asm_submitter": "Shanghai Majorbio", "gbrs_paired_asm": "GCA_001435345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/435/345/GCF_001435345.1_ASM143534v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1667627", "genome_size_ungapped": "1664914", "gc_percent": "53.500000", "replicon_count": "0", "scaffold_count": "68", "contig_count": "68", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001435345.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "1708", "protein_coding_gene_count": "1572", "non_coding_gene_count": "70", "pubmed_id": "26415554" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-06", "dateModified": "2015-11-06", "datePublished": "2015-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Limosilactobacillus pontis DSM 8475" ], "sample_taxid": [ "1423794" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.477 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1667627", "Number of Sequences": "68", "Longest Sequences (bp)": "257042", "N50 (bp)": "80708", "Gap Ratio (%)": "0.162686", "GCcontent (%)": "53.4", "Number of CDSs": "1648", "Average Protein Length": "293.7", "Coding Ratio (%)": "87.1", "Number of rRNAs": "1", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limosilactobacillus pontis", "strain": "strain=DSM 8475", "accession": "GCA_001435345.1", "taxid": 35787, "species_taxid": 35787, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 530, 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"status": "below_threshold" }, { "organism_name": "Limosilactobacillus antri", "strain": "strain=DSM 16041", "accession": "GCA_000160835.1", "taxid": 227943, "species_taxid": 227943, "relation_to_type": "type", "validated": true, "ani": 79.6649, "matched_fragments": 206, "total_fragments": 531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus oris", "strain": "strain=DSM 4864", "accession": "GCA_001434465.1", "taxid": 1632, "species_taxid": 1632, "relation_to_type": "type", "validated": true, "ani": 79.5691, "matched_fragments": 192, "total_fragments": 531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus vaginalis", "strain": "strain=DSM 5837", "accession": "GCA_001435915.1", "taxid": 1633, "species_taxid": 1633, "relation_to_type": "type", "validated": true, "ani": 79.5449, "matched_fragments": 96, "total_fragments": 531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus antri", "strain": "strain=DSM 16041", "accession": "GCA_001435475.1", "taxid": 227943, "species_taxid": 227943, "relation_to_type": "type", "validated": true, "ani": 79.5327, "matched_fragments": 200, "total_fragments": 531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus panis", "strain": "strain=DSM 6035", "accession": "GCA_001027985.1", "taxid": 47493, "species_taxid": 47493, "relation_to_type": "type", "validated": true, "ani": 79.4899, "matched_fragments": 204, "total_fragments": 531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus panis", "strain": "strain=DSM 6035", "accession": "GCA_001435935.1", "taxid": 47493, "species_taxid": 47493, "relation_to_type": "type", "validated": true, "ani": 79.3714, "matched_fragments": 207, "total_fragments": 531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus gorillae", "strain": 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