{
    "type": "genome",
    "identifier": "GCF_001435835.1",
    "organism": "Lapidilactobacillus concavus DSM 17758",
    "title": "Lapidilactobacillus concavus DSM 17758",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shanghai Majorbio",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001435835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02369374",
        "wgs_master": "AZFX00000000.1",
        "refseq_category": "na",
        "taxid": "1423735",
        "species_taxid": "287844",
        "organism_name": "Lapidilactobacillus concavus DSM 17758",
        "infraspecific_name": "strain=DSM 17758",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/11/06",
        "asm_name": "ASM143583v1",
        "asm_submitter": "Shanghai Majorbio",
        "gbrs_paired_asm": "GCA_001435835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/435/835/GCF_001435835.1_ASM143583v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1898108",
        "genome_size_ungapped": "1896973",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "96",
        "contig_count": "96",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001435835.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "1813",
        "protein_coding_gene_count": "1698",
        "non_coding_gene_count": "60",
        "pubmed_id": "26415554"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-11-06",
    "dateModified": "2015-11-06",
    "datePublished": "2015-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lapidilactobacillus concavus DSM 17758"
        ],
        "sample_taxid": [
            "1423735"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.544 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1898108",
        "Number of Sequences": "96",
        "Longest Sequences (bp)": "164938",
        "N50 (bp)": "76163",
        "Gap Ratio (%)": "0.059796",
        "GCcontent (%)": "43.3",
        "Number of CDSs": "1773",
        "Average Protein Length": "298.6",
        "Coding Ratio (%)": "83.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Lapidilactobacillus concavus",
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                "accession": "GCA_001435835.1",
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                "species_taxid": 287844,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 586,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lapidilactobacillus mulanensis",
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                "accession": "GCA_003946215.1",
                "taxid": 2485999,
                "species_taxid": 2485999,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2347,
                "matched_fragments": 247,
                "total_fragments": 592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lapidilactobacillus gannanensis",
                "strain": "strain=143-1",
                "accession": "GCA_003946675.1",
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                "species_taxid": 2486002,
                "relation_to_type": "type",
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                "total_fragments": 592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lapidilactobacillus bayanensis",
                "strain": "strain=54-5",
                "accession": "GCA_003946695.1",
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                "species_taxid": 2485998,
                "relation_to_type": "type",
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                "total_fragments": 592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lapidilactobacillus dextrinicus",
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                "accession": "GCA_001436095.1",
                "taxid": 51664,
                "species_taxid": 51664,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 117,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lapidilactobacillus wuchangensis",
                "strain": "strain=17-4",
                "accession": "GCA_003946645.1",
                "taxid": 2486001,
                "species_taxid": 2486001,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6702,
                "matched_fragments": 83,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_001435835.1",
                "gtdb_species": "s__Lapidilactobacillus concavus",
                "ani": 100.0,
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                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lapidilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
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                "total_fragments": 592,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lapidilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001436095.1",
                "gtdb_species": "s__Lapidilactobacillus dextrinicus",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lapidilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
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                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003946645.1",
                "gtdb_species": "s__Lapidilactobacillus wuchangensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lapidilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Lapidilactobacillus",
        "concavus",
        "DSM",
        "17758"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}