{ "type": "genome", "identifier": "GCF_001435895.1", "organism": "Lentilactobacillus parafarraginis DSM 18390 = JCM 14109", "title": "Lentilactobacillus parafarraginis DSM 18390 = JCM 14109", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Majorbio", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001435895.1", "bioproject": "PRJNA224116", "biosample": "SAMN02369507", "wgs_master": "AZFZ00000000.1", "refseq_category": "reference genome", "taxid": "1423786", "species_taxid": "390842", "organism_name": "Lentilactobacillus parafarraginis DSM 18390 = JCM 14109", "infraspecific_name": "strain=DSM 18390", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/06", "asm_name": "ASM143589v1", "asm_submitter": "Shanghai Majorbio", "gbrs_paired_asm": "GCA_001435895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/435/895/GCF_001435895.1_ASM143589v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3081674", "genome_size_ungapped": "3081629", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "254", "contig_count": "254", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001435895.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3032", "protein_coding_gene_count": "2886", "non_coding_gene_count": "59", "pubmed_id": "26415554" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-06", "dateModified": "2015-11-06", "datePublished": "2015-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Lentilactobacillus parafarraginis DSM 18390 = JCM 14109" ], "sample_taxid": [ "1423786" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "0.886 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3081674", "Number of Sequences": "254", "Longest Sequences (bp)": "114036", "N50 (bp)": "40117", "Gap Ratio (%)": "0.002434", "GCcontent (%)": "45.2", "Number of CDSs": "2910", "Average Protein Length": "295.2", "Coding Ratio (%)": "83.6", "Number of rRNAs": "2", "Number of tRNAs": "53", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lentilactobacillus parafarraginis", "strain": "strain=DSM 18390", "accession": "GCA_001435895.1", "taxid": 390842, 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