# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_7	LOCUS_00070	sequence01:7993..8430(+)	partial			WP_017206458.1	OsmC family protein	80.0	66.3	35.0
MGA_39	LOCUS_00390	sequence01:44231..44578(-)	partial			WP_002291179.1	glycine cleavage system protein H	71.3	73.2	31.7
MGA_57	LOCUS_00570	sequence02:282..554(+)	partial			WP_011102185.1	pyridoxamine 5'-phosphate oxidase family protein	97.8	70.5	58.0
MGA_60	LOCUS_00600	sequence02:3964..4404(-)	internal_stop_codon	4432..4434(-)		WP_011674809.1	IS30 family transposase	97.9	43.1	53.8
MGA_61	LOCUS_00610	sequence02:4432..4950(-)	internal_stop_codon	4432..4434(-)		WP_011674315.1	IS30 family transposase	95.3	50.3	41.1
MGA_62	LOCUS_00620	sequence02:5033..5977(-)	partial			WP_011222049.1	Tn3 family transposase	99.0	31.2	96.5
MGA_66	LOCUS_00660	sequence02:8505..8750(-)	partial			WP_011222005.1	protein rep	95.1	24.1	93.5
MGA_92	LOCUS_00890	sequence04:23149..23577(+)	partial			WP_011101142.1	ribosomal protein S18-alanine N-acetyltransferase	99.3	74.0	40.1
MGA_94	LOCUS_00910	sequence04:24662..25378(-)	internal_stop_codon	25424..25426(-)		WP_011674871.1	glutamate-5-semialdehyde dehydrogenase	99.2	56.5	73.7
MGA_95	LOCUS_00920	sequence04:25424..25906(-)	internal_stop_codon	25424..25426(-)		WP_011674871.1	glutamate-5-semialdehyde dehydrogenase	97.5	37.3	60.9
MGA_106	LOCUS_01030	sequence04:38373..38795(+)	partial			WP_003643951.1	ComF family protein	100.0	62.5	47.1
MGA_110	LOCUS_01070	sequence04:43274..43615(+)	partial			WP_012256601.1	PspC domain-containing protein	72.6	82.5	35.4
MGA_118	LOCUS_01150	sequence04:50856..52652(-)	partial			WP_002326842.1	LTA synthase family protein	93.8	61.8	39.9
MGA_141	LOCUS_01380	sequence04:79071..79490(-)	partial			WP_004080548.1	PAS domain-containing protein	87.8	65.8	34.4
MGA_145	LOCUS_01420	sequence04:82050..82877(+)	partial			WP_003641072.1	CdaR family protein	82.9	70.5	44.5
MGA_149	LOCUS_01460	sequence04:87091..88533(+)	internal_stop_codon	88531..88533(+)		WP_003700513.1	acyltransferase family protein	97.7	77.1	44.1
MGA_150	LOCUS_01470	sequence04:88555..88950(+)	internal_stop_codon	88531..88533(+)		WP_013245921.1	acyltransferase	97.7	53.6	50.0
MGA_154	LOCUS_01510	sequence04:91870..94266(+)	partial			WP_087118413.1	C39 family peptidase	28.1	24.8	26.6
MGA_159	LOCUS_01550	sequence05:230..1495(-)	partial			WP_010989481.1	hypothetical protein	57.0	74.8	30.2
MGA_161	LOCUS_01570	sequence05:3131..4018(-)	partial			WP_012259191.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	63.7	62.5	28.6
MGA_173	LOCUS_01690	sequence05:14902..17157(+)	partial			WP_013531683.1	phage/plasmid primase, P4 family	47.3	77.8	29.5
MGA_188	LOCUS_01840	sequence05:28662..29540(+)	partial			WP_013389345.1	RICIN domain-containing protein	62.3	22.4	34.2
MGA_259	LOCUS_02540	sequence09:43918..44355(+)	partial			WP_003641117.1	hypothetical protein	65.5	58.0	41.9
MGA_266	LOCUS_02610	sequence09:52119..52451(-)	partial			WP_162685289.1	VTT domain-containing protein	90.9	44.8	47.0
MGA_283	LOCUS_02780	sequence09:72925..73506(+)	partial			WP_011254543.1	DUF4767 domain-containing protein	97.4	57.1	35.5
MGA_287	LOCUS_02820	sequence09:79251..79802(-)	partial			WP_003700513.1	acyltransferase family protein	82.0	24.3	40.0
MGA_294	LOCUS_02890	sequence09:87388..88032(+)	partial			WP_011254311.1	Trk family potassium uptake protein	100.0	47.8	54.2
MGA_412	LOCUS_04070	sequence10:1466..1945(-)	partial			WP_011475532.1	L,D-transpeptidase	96.9	69.4	57.8
MGA_438	LOCUS_04330	sequence10:30677..31366(-)	partial			WP_011241738.1	IS3 family transposase	90.8	44.7	47.6
MGA_439	LOCUS_04340	sequence10:31600..32055(-)	frameshift,internal_stop_codon	31600..31602(-)	31548	WP_099049969.1	IS3 family transposase	100.0	33.6	30.5
MGA_476	LOCUS_04710	sequence10:66650..67069(-)	frameshift		66700	WP_003645538.1	RNase III inhibitor	88.5	71.5	71.5
MGA_478	LOCUS_04730	sequence10:68915..69559(-)	partial			WP_003642508.1	helix-turn-helix transcriptional regulator	79.0	73.6	39.4
MGA_486	LOCUS_04810	sequence10:76107..76748(+)	partial			WP_164924808.1	NAD(P)H-hydrate dehydratase	93.4	38.9	40.1
MGA_492	LOCUS_04870	sequence10:81925..83913(+)	partial			WP_010706701.1	autolysin	70.8	64.0	35.8
MGA_523	LOCUS_05180	sequence10:112380..113075(-)	partial			WP_011084101.1	RibD family protein	62.8	59.3	30.3
MGA_533	LOCUS_05280	sequence10:120121..120558(+)	partial			WP_011476515.1	helix-turn-helix domain-containing protein	66.2	82.2	48.5
MGA_547	LOCUS_05420	sequence10:132269..133090(+)	partial			WP_009893097.1	MerR family transcriptional regulator	36.6	36.8	35.0
MGA_559	LOCUS_05540	sequence10:144447..145565(+)	partial			WP_003130876.1	alanine--tRNA ligase	89.5	42.1	23.4
MGA_560	LOCUS_05550	sequence10:145894..146058(+)	frameshift		145672,146026	WP_002904591.1	zinc-binding alcohol dehydrogenase family protein	79.6	13.4	76.7
MGA_561	LOCUS_05560	sequence10:146033..146593(+)	frameshift		146022	WP_002262242.1	zinc-binding alcohol dehydrogenase family protein	97.3	56.6	53.6
MGA_601	LOCUS_05960	sequence10:191066..193252(+)	partial			WP_011101976.1	choice-of-anchor A family protein	55.8	49.3	33.5
MGA_607	LOCUS_06020	sequence10:198763..199071(-)	frameshift		199072	WP_011674782.1	NUDIX hydrolase	90.2	58.7	48.9
MGA_636	LOCUS_06310	sequence10:236097..236504(-)	partial			WP_071742188.1	hypothetical protein	68.9	84.0	34.4
MGA_640	LOCUS_06350	sequence10:241433..242002(+)	partial			WP_011101399.1	flavocytochrome c	94.7	22.0	46.9
MGA_684	LOCUS_06790	sequence10:288734..289390(-)	partial			WP_000469013.1	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	93.6	50.1	47.1
MGA_701	LOCUS_06950	sequence12:13725..14003(+)	partial			WP_002297107.1	YlbG family protein	78.3	64.3	44.4
MGA_732	LOCUS_07260	sequence12:43959..44186(+)	partial			WP_003699860.1	YneF family protein	73.3	74.3	69.1
MGA_755	LOCUS_07490	sequence12:67143..67724(+)	partial			WP_003547792.1	nucleotide exchange factor GrpE	73.1	72.7	61.7
MGA_804	LOCUS_07980	sequence12:120048..120533(+)	frameshift		120025	WP_003645009.1	helix-turn-helix domain-containing protein	95.7	45.2	29.0
MGA_836	LOCUS_08300	sequence12:152416..153195(+)	partial			WP_003546370.1	DUF2974 domain-containing protein	89.2	74.8	44.2
MGA_837	LOCUS_08310	sequence12:153201..153686(+)	partial			WP_015944154.1	DUF438 domain-containing protein	78.9	31.0	33.1
MGA_843	LOCUS_08370	sequence12:157334..157465(-)	frameshift		157574	WP_000660666.1	carboxymuconolactone decarboxylase family protein	95.3	39.0	70.7
MGA_844	LOCUS_08380	sequence12:157530..157652(-)	frameshift		157574	WP_002296337.1	carboxymuconolactone decarboxylase family protein	97.5	34.2	61.5
MGA_845	LOCUS_08390	sequence12:157876..158550(+)	partial			WP_010906063.1	MgtC/SapB family protein	60.7	59.6	57.4
MGA_846	LOCUS_08400	sequence12:158720..158914(-)	partial			WP_011202734.1	dihydrofolate reductase family protein	81.2	22.7	50.0
MGA_848	LOCUS_08420	sequence12:159425..160363(+)	frameshift		159371	WP_010819571.1	diaminopropionate ammonia-lyase	99.4	78.8	43.8
MGA_869	LOCUS_08630	sequence12:176803..177231(+)	partial			WP_003549990.1	matrixin family metalloprotease	97.2	57.3	35.7
MGA_896	LOCUS_08900	sequence12:204372..205334(-)	partial			WP_003549434.1	ElyC/SanA/YdcF family protein	56.9	50.3	30.2
MGA_915	LOCUS_09090	sequence12:222334..222834(-)	partial			WP_011475988.1	EbsA family protein	57.8	77.4	34.4
MGA_930	LOCUS_09240	sequence12:239317..240120(+)	partial			WP_081581110.1	N-acetylmuramoyl-L-alanine amidase	79.8	20.2	54.0
MGA_937	LOCUS_09310	sequence12:246577..247086(-)	internal_stop_codon	246577..246579(-)		WP_011241738.1	IS3 family transposase	100.0	36.2	47.9
MGA_938	LOCUS_09320	sequence12:247209..247733(-)	frameshift		247223	WP_099049969.1	IS3 family transposase	98.3	38.4	31.6
MGA_939	LOCUS_09330	sequence12:247857..248153(-)	frameshift		248249,248340,248165	WP_125607117.1	IS30 family transposase	90.8	29.1	42.7
MGA_943	LOCUS_09370	sequence12:249364..249567(-)	frameshift,internal_stop_codon	249364..249366(-)	249664	WP_011241738.1	IS3 family transposase	100.0	14.6	76.1
MGA_944	LOCUS_09380	sequence12:249644..250126(-)	frameshift,internal_stop_codon	249363..249365(-),250333..250335(-)	249666,250275	WP_011241738.1	IS3 family transposase	97.5	34.0	78.8
MGA_945	LOCUS_09390	sequence12:250333..250488(-)	frameshift,internal_stop_codon	250333..250335(-)	250275	WP_011241738.1	IS3 family transposase	72.5	8.1	70.3
MGA_947	LOCUS_09410	sequence12:253309..254154(+)	frameshift,internal_stop_codon	254152..254154(+)	254379	WP_003549893.1	IS110 family transposase	97.5	66.9	47.1
MGA_948	LOCUS_09420	sequence12:256695..257687(-)	partial			WP_011203391.1	glycosyltransferase family 2 protein	80.3	70.6	30.1
MGA_949	LOCUS_09430	sequence12:257707..258648(-)	partial			WP_011101280.1	capsular polysaccharide synthesis protein	75.4	73.0	37.4
MGA_950	LOCUS_09440	sequence12:258614..259453(-)	partial			WP_010965473.1	glycosyltransferase	78.5	67.0	34.3
MGA_953	LOCUS_09470	sequence12:261819..262220(-)	frameshift		262275	WP_002902061.1	sugar transferase	98.5	65.2	51.1
MGA_977	LOCUS_09710	sequence12:288258..288719(-)	frameshift		288712	WP_010906204.1	DUF4065 domain-containing protein	98.0	49.7	29.4
MGA_978	LOCUS_09720	sequence12:288704..289180(-)	frameshift		288712	WP_010906204.1	DUF4065 domain-containing protein	91.1	47.1	43.1
MGA_1029	LOCUS_10230	sequence12:341543..342067(-)	partial			WP_003548049.1	YSIRK-type signal peptide-containing protein	86.8	3.8	26.9
MGA_1032	LOCUS_10260	sequence12:344318..345634(-)	partial			WP_011101483.1	signal recognition particle-docking protein FtsY	78.3	66.8	69.7
MGA_1044	LOCUS_10380	sequence12:358440..358817(-)	frameshift		358903	WP_011101478.1	Stk1 family PASTA domain-containing Ser/Thr kinase	84.0	16.5	35.7
MGA_1045	LOCUS_10390	sequence12:358808..360328(-)	frameshift,internal_stop_codon	359329..359331(-)	359280,358908,359365	WP_011101478.1	Stk1 family PASTA domain-containing Ser/Thr kinase	93.5	75.1	51.9
MGA_1067	LOCUS_10610	sequence12:378988..380235(-)	partial			WP_011475963.1	LysM peptidoglycan-binding domain-containing protein	55.7	54.0	75.3
MGA_1068	LOCUS_10620	sequence12:380216..380524(-)	partial			WP_011101731.1	phage holin	69.6	57.6	47.2
MGA_1073	LOCUS_10670	sequence12:382373..384697(-)	partial			WP_011475959.1	BppU family phage baseplate upper protein	23.5	48.3	31.2
MGA_1076	LOCUS_10700	sequence12:385368..387515(-)	partial			WP_225355414.1	C40 family peptidase	20.0	27.4	41.0
MGA_1078	LOCUS_10720	sequence12:388486..392751(-)	partial			WP_011475661.1	tape measure protein	32.2	33.3	34.3
MGA_1092	LOCUS_10860	sequence12:401936..402430(-)	partial			WP_002383816.1	helix-turn-helix domain-containing protein	60.4	83.7	34.9
MGA_1093	LOCUS_10870	sequence12:402469..403017(-)	frameshift		403124	WP_002399577.1	DNA modification methylase	95.6	43.5	65.5
MGA_1094	LOCUS_10880	sequence12:403113..403658(-)	frameshift		403124	WP_010922072.1	DNA modification methylase	96.7	45.6	52.5
MGA_1106	LOCUS_11000	sequence12:409490..410152(-)	partial			WP_011475626.1	putative HNHc nuclease	78.2	72.7	37.0
MGA_1125	LOCUS_11190	sequence12:416391..416711(+)	partial			WP_008761998.1	FHA domain-containing serine/threonine-protein kinase	54.7	12.8	41.4
MGA_1192	LOCUS_11860	sequence12:471691..472026(+)	partial			WP_000118540.1	PepSY domain-containing protein	73.9	79.6	39.3
MGA_1218	LOCUS_12120	sequence12:495158..496135(-)	partial			WP_025188680.1	DnaD domain protein	33.2	42.6	35.2
MGA_1238	LOCUS_12320	sequence12:506509..506955(-)	partial			WP_002286297.1	NlpC/P60 family protein	62.2	13.7	37.8
MGA_1263	LOCUS_12570	sequence12:531408..532331(-)	partial			WP_002287681.1	Fe-S cluster assembly protein SufD	67.4	50.7	25.6
MGA_1271	LOCUS_12640	sequence15:4561..5214(-)	partial			WP_002912084.1	matrixin family metalloprotease	66.4	60.3	54.9
MGA_1276	LOCUS_12690	sequence15:8474..8761(-)	frameshift		8518	WP_000122833.1	MobV family relaxase	85.3	19.6	42.7
MGA_1281	LOCUS_12730	sequence18:33..722(-)	partial			WP_011241738.1	IS3 family transposase	93.4	46.0	46.3
MGA_1282	LOCUS_12740	sequence18:887..1411(-)	frameshift		922	WP_100067904.1	IS3-like element IS1661 family transposase	97.7	37.7	31.8
MGA_1285	LOCUS_12760	sequence20:1504..1818(+)	frameshift,internal_stop_codon	1816..1818(+)	1848	WP_002503031.1	helix-turn-helix domain-containing protein	97.1	49.3	43.6
MGA_1295	LOCUS_12860	sequence20:9507..9710(+)	frameshift,internal_stop_codon	9763..9765(+),9868..9870(+)	9701	WP_015703134.1	GMP synthase	97.0	27.3	44.6
MGA_1309	LOCUS_13000	sequence20:20926..22470(+)	partial			WP_000582678.1	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	86.4	57.7	33.7
MGA_1335	LOCUS_13260	sequence20:47250..48821(+)	partial			WP_011476414.1	KxYKxGKxW signal peptide domain-containing protein	87.2	50.1	40.8
MGA_1340	LOCUS_13310	sequence20:52833..54152(-)	partial			WP_011674023.1	GW dipeptide domain-containing protein	46.7	22.4	46.4
MGA_1341	LOCUS_13320	sequence20:54315..56618(+)	partial			WP_010964394.1	hypothetical protein	68.2	17.5	31.6
MGA_1344	LOCUS_13350	sequence20:60893..61606(+)	partial			WP_011017006.1	sugar phosphate nucleotidyltransferase	94.9	41.8	39.8
MGA_1351	LOCUS_13420	sequence20:73196..74482(+)	partial			WP_000753855.1	choline-binding protein PcpA	49.5	28.6	38.2
MGA_1355	LOCUS_13450	sequence20:79508..81784(+)	partial			WP_010964394.1	hypothetical protein	74.0	18.7	32.3
MGA_1358	LOCUS_13480	sequence20:85894..87633(+)	frameshift		87424,87622,87615	WP_001035315.1	pneumococcal surface protein A	32.3	29.2	40.1
MGA_1360	LOCUS_13500	sequence20:88014..89810(+)	partial			WP_011101863.1	SH3 domain-containing protein	25.8	19.6	56.5
MGA_1365	LOCUS_13520	sequence22:359..736(+)	partial			WP_003563849.1	SemiSWEET family transporter	57.6	70.3	56.9
MGA_1375	LOCUS_13620	sequence22:11588..11800(-)	partial			WP_011074563.1	phosphatase PAP2 family protein	94.3	36.7	51.5
MGA_1386	LOCUS_13730	sequence22:21721..22926(+)	internal_stop_codon	22924..22926(+)		WP_003644494.1	MFS transporter	93.3	76.9	48.5
MGA_1387	LOCUS_13740	sequence22:22939..23214(+)	internal_stop_codon	22924..22926(+)		WP_003644494.1	MFS transporter	98.9	19.4	46.8
MGA_1414	LOCUS_14010	sequence22:47526..47696(-)	frameshift		47875	WP_003547411.1	NAD(P)H-binding protein	100.0	26.2	53.6
MGA_1415	LOCUS_14020	sequence22:47843..48172(-)	frameshift		47875	WP_003547411.1	NAD(P)H-binding protein	89.0	45.3	53.6
MGA_1421	LOCUS_14080	sequence22:52784..53875(+)	partial			WP_028730510.1	FRG domain-containing protein	33.9	24.5	35.0
MGA_1422	LOCUS_14090	sequence22:54009..55598(-)	partial			WP_003548485.1	mucus-binding protein	69.4	59.3	37.2
MGA_1423	LOCUS_14100	sequence22:55706..70588(-)	frameshift		70571	WP_011254318.1	YSIRK-type signal peptide-containing protein	25.4	58.4	38.1
MGA_1435	LOCUS_14220	sequence22:82898..85240(-)	partial			WP_001803121.1	fatty acid efflux MMPL transporter FarE	57.1	54.3	38.9
MGA_1437	LOCUS_14240	sequence22:85358..85879(+)	partial			WP_000665238.1	fatty acid efflux pump transcriptional regulator FarR	73.4	69.8	32.0
MGA_1464	LOCUS_14510	sequence23:26439..26840(+)	partial			WP_003640853.1	cell division protein SepF	69.2	65.7	60.9
MGA_1483	LOCUS_14690	sequence25:968..1378(+)	partial			WP_010867372.1	methylmalonyl-CoA epimerase	69.1	76.7	30.4
MGA_1496	LOCUS_14820	sequence25:14638..15021(-)	frameshift,internal_stop_codon	15228..15230(-)	15086	WP_000814758.1	DMT family transporter	94.5	40.1	41.5
MGA_1497	LOCUS_14830	sequence25:15228..15518(-)	frameshift,internal_stop_codon	15228..15230(-)	15092	WP_000814724.1	DMT family transporter	93.8	32.0	46.4
MGA_1529	LOCUS_15150	sequence25:49729..50307(+)	frameshift		50283	WP_011101016.1	ABC transporter ATP-binding protein	95.3	80.2	56.7
MGA_1588	LOCUS_15740	sequence26:13260..13691(-)	partial			WP_003641537.1	DUF948 domain-containing protein	70.6	73.2	41.6
MGA_1592	LOCUS_15780	sequence26:15954..16745(-)	internal_stop_codon	15954..15956(-)		WP_011674284.1	glutamate racemase	95.4	52.3	40.7
MGA_1593	LOCUS_15790	sequence26:16890..17414(+)	partial			WP_003641529.1	YslB family protein	83.9	64.3	32.7
MGA_1605	LOCUS_15910	sequence26:28548..28994(-)	partial			WP_003700554.1	preprotein translocase subunit YajC	54.1	63.5	68.8
MGA_1661	LOCUS_16470	sequence26:90429..90647(-)	partial			WP_000052064.1	F0F1 ATP synthase subunit C	73.6	73.6	58.5
MGA_1683	LOCUS_16690	sequence26:114532..115395(-)	partial			WP_010707088.1	helix-turn-helix transcriptional regulator	58.9	48.1	30.8
MGA_1692	LOCUS_16780	sequence26:120830..121561(-)	frameshift		121565	WP_010966780.1	group II intron reverse transcriptase/maturase	98.4	50.9	46.0
MGA_1693	LOCUS_16790	sequence26:121545..122102(-)	frameshift		121550	WP_005808874.1	group II intron reverse transcriptase/maturase	96.2	38.0	56.7