{
    "type": "genome",
    "identifier": "GCF_001436175.1",
    "organism": "Lentilactobacillus kefiri DSM 20587 = JCM 5818",
    "title": "Lentilactobacillus kefiri DSM 20587 = JCM 5818",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shanghai Majorbio",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001436175.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02369455",
        "wgs_master": "AYYV00000000.1",
        "refseq_category": "na",
        "taxid": "1423764",
        "species_taxid": "33962",
        "organism_name": "Lentilactobacillus kefiri DSM 20587 = JCM 5818",
        "infraspecific_name": "strain=DSM 20587",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/11/06",
        "asm_name": "ASM143617v1",
        "asm_submitter": "Shanghai Majorbio",
        "gbrs_paired_asm": "GCA_001436175.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/436/175/GCF_001436175.1_ASM143617v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2229333",
        "genome_size_ungapped": "2229129",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "95",
        "contig_count": "95",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001436175.1-RS_2024_03_30",
        "annotation_date": "2024-03-30",
        "total_gene_count": "2150",
        "protein_coding_gene_count": "2052",
        "non_coding_gene_count": "59",
        "pubmed_id": "26415554"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-11-06",
    "dateModified": "2015-11-06",
    "datePublished": "2015-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lentilactobacillus kefiri DSM 20587 = JCM 5818"
        ],
        "sample_taxid": [
            "1423764"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "-"
        ],
        "sample_host_location_id": [],
        "data_size": "0.637 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2229333",
        "Number of Sequences": "95",
        "Longest Sequences (bp)": "174445",
        "N50 (bp)": "68014",
        "Gap Ratio (%)": "0.009151",
        "GCcontent (%)": "41.7",
        "Number of CDSs": "2121",
        "Average Protein Length": "301.7",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lentilactobacillus kefiri",
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                "accession": "GCA_001436175.1",
                "taxid": 33962,
                "species_taxid": 33962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lentilactobacillus kefiri",
                "strain": "strain=NBRC 15888",
                "accession": "GCA_007989105.1",
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                "species_taxid": 33962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9339,
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                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lentilactobacillus sunkii",
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                "accession": "GCA_001435575.1",
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                "species_taxid": 481719,
                "relation_to_type": "type",
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                "ani": 84.1327,
                "matched_fragments": 520,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lentilactobacillus otakiensis",
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                "accession": "GCA_000415925.1",
                "taxid": 481720,
                "species_taxid": 481720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7503,
                "matched_fragments": 483,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lentilactobacillus otakiensis",
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                "accession": "GCA_001434145.1",
                "taxid": 481720,
                "species_taxid": 481720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7242,
                "matched_fragments": 483,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lentilactobacillus otakiensis",
                "strain": "strain=JCM 15040",
                "accession": "GCA_001311395.1",
                "taxid": 481720,
                "species_taxid": 481720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6938,
                "matched_fragments": 480,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007989105.1",
                "gtdb_species": "s__Lentilactobacillus kefiri",
                "ani": 99.9339,
                "matched_fragments": 674,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.64",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001435575.1",
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                "ani": 84.143,
                "matched_fragments": 519,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.44",
                "min_intra_species_ani": "96.44",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
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                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.91",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_018314255.1",
                "gtdb_species": "s__Lentilactobacillus buchneri",
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                "matched_fragments": 452,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.61",
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                "num_clustered_genomes": 27,
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            },
            {
                "accession": "GCF_001435315.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus",
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                "num_clustered_genomes": 27,
                "status": "-"
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000583655.1",
                "gtdb_species": "s__Lentilactobacillus farraginis",
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                "matched_fragments": 184,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
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                "mean_intra_species_af": "0.99",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900411375.1",
                "gtdb_species": "s__Lentilactobacillus raoultii",
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                "matched_fragments": 161,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Lentilactobacillus",
        "kefiri",
        "DSM",
        "20587",
        "=",
        "JCM",
        "5818"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}