{
    "type": "genome",
    "identifier": "GCF_001436385.1",
    "organism": "Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 = DSM 5622 = JCM 8130",
    "title": "Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 = DSM 5622 = JCM 8130",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shanghai Majorbio",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001436385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02369433",
        "wgs_master": "AZGH00000000.1",
        "refseq_category": "na",
        "taxid": "525337",
        "species_taxid": "1597",
        "organism_name": "Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 = DSM 5622 = JCM 8130",
        "infraspecific_name": "strain=DSM 5622",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/11/06",
        "asm_name": "ASM143638v1",
        "asm_submitter": "Shanghai Majorbio",
        "gbrs_paired_asm": "GCA_001436385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/436/385/GCF_001436385.1_ASM143638v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2881963",
        "genome_size_ungapped": "2881963",
        "gc_percent": "46.500000",
        "replicon_count": "0",
        "scaffold_count": "170",
        "contig_count": "170",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001436385.1-RS_2024_04_01",
        "annotation_date": "2024-04-01",
        "total_gene_count": "2856",
        "protein_coding_gene_count": "2672",
        "non_coding_gene_count": "55",
        "pubmed_id": "26415554"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-11-06",
    "dateModified": "2015-11-06",
    "datePublished": "2015-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 = DSM 5622 = JCM 8130"
        ],
        "sample_taxid": [
            "525337"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "-"
        ],
        "sample_host_location_id": [],
        "data_size": "0.828 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2881963",
        "Number of Sequences": "170",
        "Longest Sequences (bp)": "289073",
        "N50 (bp)": "57042",
        "Gap Ratio (%)": "0.001076",
        "GCcontent (%)": "46.5",
        "Number of CDSs": "2749",
        "Average Protein Length": "290.4",
        "Coding Ratio (%)": "83.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Lacticaseibacillus paracasei subsp. paracasei",
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                "accession": "GCA_001436385.1",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Lacticaseibacillus paracasei subsp. paracasei",
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            {
                "organism_name": "Lacticaseibacillus paracasei subsp. paracasei",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Lacticaseibacillus paracasei subsp. paracasei",
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                "species_taxid": 1597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9796,
                "matched_fragments": 884,
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                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus paracasei subsp. paracasei",
                "strain": "strain=NBRC 15889",
                "accession": "GCA_007989125.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 856,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus casei",
                "strain": "strain=ATCC 393",
                "accession": "GCA_000829055.1",
                "taxid": 1582,
                "species_taxid": 1582,
                "relation_to_type": "suspected-type",
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                "matched_fragments": 403,
                "total_fragments": 890,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000829035.1",
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                "total_fragments": 890,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
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                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_000260435.1",
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                "mean_intra_species_ani": "98.07",
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            },
            {
                "accession": "GCF_004123795.1",
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                "matched_fragments": 383,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
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            {
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            },
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                "mean_intra_species_ani": "N/A",
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            }
        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": null,
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        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
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    },
    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}