{ "type": "genome", "identifier": "GCF_001436595.1", "organism": "Secundilactobacillus similis DSM 23365 = JCM 2765", "title": "Secundilactobacillus similis DSM 23365 = JCM 2765", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Majorbio", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001436595.1", "bioproject": "PRJNA224116", "biosample": "SAMN02369474", "wgs_master": "AYZM00000000.1", "refseq_category": "reference genome", "taxid": "1423804", "species_taxid": "414682", "organism_name": "Secundilactobacillus similis DSM 23365 = JCM 2765", "infraspecific_name": "strain=DSM 23365", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/06", "asm_name": "ASM143659v1", "asm_submitter": "Shanghai Majorbio", "gbrs_paired_asm": "GCA_001436595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/436/595/GCF_001436595.1_ASM143659v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3476170", "genome_size_ungapped": "3472830", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "181", "contig_count": "181", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001436595.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3194", "protein_coding_gene_count": "3076", "non_coding_gene_count": "68", "pubmed_id": "26415554" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-06", "dateModified": "2015-11-06", "datePublished": "2015-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Secundilactobacillus similis DSM 23365 = JCM 2765" ], "sample_taxid": [ "1423804" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "0.996 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3476170", "Number of Sequences": "181", "Longest Sequences (bp)": "149654", "N50 (bp)": "61916", "Gap Ratio (%)": "0.096083", "GCcontent (%)": "47.0", "Number of CDSs": "3116", "Average Protein Length": "300.6", "Coding Ratio (%)": "80.8", "Number of rRNAs": "2", "Number of tRNAs": "60", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Secundilactobacillus similis", "strain": "strain=DSM 23365", "accession": "GCA_001436595.1", "taxid": 414682, 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"type", "validated": true, "ani": 79.13, "matched_fragments": 273, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Secundilactobacillus hailunensis", "strain": "strain=887-11", "accession": "GCA_005405185.1", "taxid": 2559923, "species_taxid": 2559923, "relation_to_type": "type", "validated": true, "ani": 79.0763, "matched_fragments": 224, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Secundilactobacillus pentosiphilus", "strain": "strain=IWT25", "accession": "GCA_002217985.1", "taxid": 1714682, "species_taxid": 1714682, "relation_to_type": "type", "validated": true, "ani": 78.9838, "matched_fragments": 195, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Secundilactobacillus silagincola", "strain": "strain=IWT5", "accession": "GCA_002583405.1", "taxid": 1714681, "species_taxid": 1714681, "relation_to_type": "type", "validated": true, 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"status": "below_threshold" }, { "organism_name": "Levilactobacillus tujiorum", "strain": "strain=HBUAS51241", "accession": "GCA_012641185.1", "taxid": 2912243, "species_taxid": 2912243, "relation_to_type": "type", "validated": true, "ani": 77.9007, "matched_fragments": 106, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Levilactobacillus acidifarinae", "strain": "strain=DSM 19394", "accession": "GCA_001434835.1", "taxid": 267364, "species_taxid": 267364, "relation_to_type": "type", "validated": true, "ani": 77.702, "matched_fragments": 96, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001311075.1", "gtdb_species": "s__Secundilactobacillus similis", "ani": 99.8875, "matched_fragments": 1017, "total_fragments": 1097, "gtdb_taxonomy": 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