{
    "type": "genome",
    "identifier": "GCF_001436905.1",
    "organism": "Pediococcus claussenii",
    "title": "Pediococcus claussenii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shanghai Majorbio",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001436905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02797810",
        "wgs_master": "JQBB00000000.1",
        "refseq_category": "na",
        "taxid": "187452",
        "species_taxid": "187452",
        "organism_name": "Pediococcus claussenii",
        "infraspecific_name": "strain=DSM 14800",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/11/06",
        "asm_name": "ASM143690v1",
        "asm_submitter": "Shanghai Majorbio",
        "gbrs_paired_asm": "GCA_001436905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/436/905/GCF_001436905.1_ASM143690v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1879349",
        "genome_size_ungapped": "1879169",
        "gc_percent": "36.500000",
        "replicon_count": "0",
        "scaffold_count": "44",
        "contig_count": "44",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001436905.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "1868",
        "protein_coding_gene_count": "1785",
        "non_coding_gene_count": "55",
        "pubmed_id": "26415554"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-11-06",
    "dateModified": "2015-11-06",
    "datePublished": "2015-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pediococcus claussenii"
        ],
        "sample_taxid": [
            "187452"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.533 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1879349",
        "Number of Sequences": "44",
        "Longest Sequences (bp)": "304195",
        "N50 (bp)": "219838",
        "Gap Ratio (%)": "0.009897",
        "GCcontent (%)": "36.7",
        "Number of CDSs": "1816",
        "Average Protein Length": "298.4",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pediococcus claussenii",
                "strain": "strain=DSM 14800",
                "accession": "GCA_001436905.1",
                "taxid": 187452,
                "species_taxid": 187452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 610,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pediococcus claussenii",
                "strain": "strain=ATCC BAA-344",
                "accession": "GCA_000237995.2",
                "taxid": 187452,
                "species_taxid": 187452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9869,
                "matched_fragments": 608,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pediococcus argentinicus",
                "strain": "strain=CCUG 54535",
                "accession": "GCA_012396535.1",
                "taxid": 480391,
                "species_taxid": 480391,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5562,
                "matched_fragments": 119,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pediococcus argentinicus",
                "strain": "strain=DSM 23026",
                "accession": "GCA_001437605.1",
                "taxid": 480391,
                "species_taxid": 480391,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5548,
                "matched_fragments": 123,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pediococcus parvulus",
                "strain": "strain=JCM 5889",
                "accession": "GCA_014651215.1",
                "taxid": 54062,
                "species_taxid": 54062,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0739,
                "matched_fragments": 71,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pediococcus parvulus",
                "strain": "strain=NBRC 100673",
                "accession": "GCA_007990205.1",
                "taxid": 54062,
                "species_taxid": 54062,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0628,
                "matched_fragments": 66,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pediococcus ethanolidurans",
                "strain": "strain=DSM 22301",
                "accession": "GCA_001437405.1",
                "taxid": 319653,
                "species_taxid": 319653,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8549,
                "matched_fragments": 77,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pediococcus ethanolidurans",
                "strain": "strain=CGMCC 1.3889",
                "accession": "GCA_900111205.1",
                "taxid": 319653,
                "species_taxid": 319653,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6368,
                "matched_fragments": 75,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Liquorilactobacillus nagelii",
                "strain": "strain=DSM 13675",
                "accession": "GCA_019444005.1",
                "taxid": 82688,
                "species_taxid": 82688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.243,
                "matched_fragments": 51,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000237995.1",
                "gtdb_species": "s__Pediococcus claussenii",
                "ani": 99.9869,
                "matched_fragments": 608,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Pediococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001437285.1",
                "gtdb_species": "s__Pediococcus pentosaceus",
                "ani": 78.6024,
                "matched_fragments": 109,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Pediococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 75,
                "status": "-"
            },
            {
                "accession": "GCF_001437605.1",
                "gtdb_species": "s__Pediococcus argentinicus",
                "ani": 78.5548,
                "matched_fragments": 123,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Pediococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_007990205.1",
                "gtdb_species": "s__Pediococcus parvulus",
                "ani": 78.0628,
                "matched_fragments": 66,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Pediococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "98.77",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001437405.1",
                "gtdb_species": "s__Pediococcus ethanolidurans",
                "ani": 77.8549,
                "matched_fragments": 77,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Pediococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "97.25",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.16,
        "cell_length": -0.158,
        "doubling_h": null,
        "growth_tmp": 31.0,
        "optimum_tmp": 36.833,
        "optimum_ph": 6.316,
        "genome_size": 1960894.222,
        "gc_content": 38.217,
        "coding_genes": 1846.4,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 57.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pediococcus",
        "claussenii"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}