{ "type": "genome", "identifier": "GCF_001437425.1", "organism": "Weissella minor", "title": "Weissella minor", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Majorbio", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001437425.1", "bioproject": "PRJNA224116", "biosample": "SAMN02797798", "wgs_master": "JQCD00000000.1", "refseq_category": "reference genome", "taxid": "1620", "species_taxid": "1620", "organism_name": "Weissella minor", "infraspecific_name": "strain=DSM 20014", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/06", "asm_name": "ASM143742v1", "asm_submitter": "Shanghai Majorbio", "gbrs_paired_asm": "GCA_001437425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/437/425/GCF_001437425.1_ASM143742v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1768499", "genome_size_ungapped": "1767583", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001437425.1-RS_2024_03_17", "annotation_date": "2024-03-17", "total_gene_count": "1865", "protein_coding_gene_count": "1779", "non_coding_gene_count": "72", "pubmed_id": "26415554" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-06", "dateModified": "2015-11-06", "datePublished": "2015-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Weissella minor" ], "sample_taxid": [ "1620" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.499 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1768499", "Number of Sequences": "31", "Longest Sequences (bp)": "596920", "N50 (bp)": "314706", "Gap Ratio (%)": "0.051795", "GCcontent (%)": "39.3", "Number of CDSs": "1783", "Average Protein Length": "289.2", "Coding Ratio (%)": "87.5", "Number of rRNAs": "4", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Weissella minor", "strain": "strain=DSM 20014", "accession": "GCA_001437425.1", "taxid": 1620, "species_taxid": 1620, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 579, "total_fragments": 579, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Weissella viridescens", "strain": "strain=NCDO 1655", "accession": "GCA_001460875.1", "taxid": 1629, "species_taxid": 1629, "relation_to_type": "type", "validated": true, "ani": 80.3479, "matched_fragments": 204, "total_fragments": 579, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella viridescens", "strain": "strain=DSM 20410", "accession": "GCA_001437355.1", "taxid": 1629, "species_taxid": 1629, "relation_to_type": "type", "validated": true, "ani": 80.3164, "matched_fragments": 233, "total_fragments": 579, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella uvarum", "strain": "strain=B18NM42", "accession": "GCA_023657405.1", "taxid": 1479233, "species_taxid": 1479233, "relation_to_type": "type", "validated": true, "ani": 79.832, "matched_fragments": 216, "total_fragments": 579, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella uvarum", "strain": "strain=DSM 28060", "accession": "GCA_016908785.1", 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