{ "type": "genome", "identifier": "GCF_001438705.1", "organism": "Weissella kandleri", "title": "Weissella kandleri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Majorbio", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001438705.1", "bioproject": "PRJNA224116", "biosample": "SAMN02797804", "wgs_master": "JQBP00000000.1", "refseq_category": "reference genome", "taxid": "1616", "species_taxid": "1616", "organism_name": "Weissella kandleri", "infraspecific_name": "strain=DSM 20593", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/06", "asm_name": "ASM143870v1", "asm_submitter": "Shanghai Majorbio", "gbrs_paired_asm": "GCA_001438705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/438/705/GCF_001438705.1_ASM143870v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1334438", "genome_size_ungapped": "1330678", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001438705.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "1312", "protein_coding_gene_count": "1254", "non_coding_gene_count": "45", "pubmed_id": "26415554" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-06", "dateModified": "2015-11-06", "datePublished": "2015-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Weissella kandleri" ], "sample_taxid": [ "1616" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.378 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1334438", "Number of Sequences": "21", "Longest Sequences (bp)": "327196", "N50 (bp)": "286295", "Gap Ratio (%)": "0.281767", "GCcontent (%)": "39.7", "Number of CDSs": "1276", "Average Protein Length": "298.4", "Coding Ratio (%)": "85.6", "Number of rRNAs": "2", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Weissella kandleri", "strain": "strain=DSM 20593", "accession": "GCA_001438705.1", "taxid": 1616, "species_taxid": 1616, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 436, "total_fragments": 437, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Weissella coleopterorum", "strain": "strain=HDW19", "accession": "GCA_011304355.1", "taxid": 2714949, "species_taxid": 2714949, "relation_to_type": "type", "validated": true, "ani": 79.3682, "matched_fragments": 129, "total_fragments": 437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella koreensis", "strain": "strain=KCTC 3621", "accession": "GCA_000277645.1", "taxid": 165096, "species_taxid": 165096, "relation_to_type": "type", "validated": true, "ani": 78.9285, "matched_fragments": 134, "total_fragments": 437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella uvarum", "strain": "strain=DSM 28060", "accession": "GCA_016908785.1", "taxid": 1479233, "species_taxid": 1479233, "relation_to_type": "type", "validated": true, "ani": 78.8892, "matched_fragments": 51, "total_fragments": 437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella diestrammenae", "strain": "strain=KACC 16890", 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2559928, "relation_to_type": "type", "validated": true, "ani": 78.3678, "matched_fragments": 54, "total_fragments": 437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella minor", "strain": "strain=DSM 20014", "accession": "GCA_001437425.1", "taxid": 1620, "species_taxid": 1620, "relation_to_type": "type", "validated": true, "ani": 78.3194, "matched_fragments": 58, "total_fragments": 437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella paramesenteroides", "strain": "strain=ATCC 33313", "accession": "GCA_000160575.1", "taxid": 1249, "species_taxid": 1249, "relation_to_type": "type", "validated": true, "ani": 77.9653, "matched_fragments": 58, "total_fragments": 437, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001438705.1", "gtdb_species": "s__Weissella kandleri", "ani": 100.0, 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