{ "type": "genome", "identifier": "GCF_001438845.1", "organism": "Lactiplantibacillus xiangfangensis", "title": "Lactiplantibacillus xiangfangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Majorbio", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001438845.1", "bioproject": "PRJNA224116", "biosample": "SAMN02797795", "wgs_master": "JQCL00000000.1", "refseq_category": "na", "taxid": "942150", "species_taxid": "942150", "organism_name": "Lactiplantibacillus xiangfangensis", "infraspecific_name": "strain=LMG 26013", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/06", "asm_name": "ASM143884v1", "asm_submitter": "Shanghai Majorbio", "gbrs_paired_asm": "GCA_001438845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/438/845/GCF_001438845.1_ASM143884v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2989578", "genome_size_ungapped": "2988776", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "103", "contig_count": "103", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001438845.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2837", "protein_coding_gene_count": "2723", "non_coding_gene_count": "63", "pubmed_id": "26415554" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-06", "dateModified": "2015-11-06", "datePublished": "2015-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactiplantibacillus xiangfangensis" ], "sample_taxid": [ "942150" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"total_fragments": 957, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactiplantibacillus garii", "strain": "strain=FI11369", "accession": "GCA_003885105.1", "taxid": 2306423, "species_taxid": 2306423, "relation_to_type": "type", "validated": true, "ani": 82.491, "matched_fragments": 547, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus plajomi", "strain": "strain=NBRC 107333", "accession": "GCA_005405405.1", "taxid": 1457217, "species_taxid": 1457217, "relation_to_type": "type", "validated": true, "ani": 80.8253, "matched_fragments": 418, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus argentoratensis", "strain": "strain=DSM 16365", "accession": "GCA_003641165.1", "taxid": 271881, "species_taxid": 271881, "relation_to_type": "type", "validated": true, "ani": 80.7909, "matched_fragments": 384, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus pentosus", "strain": "strain=ATCC 8041", "accession": "GCA_004354685.1", "taxid": 1589, "species_taxid": 1589, "relation_to_type": "type", "validated": true, "ani": 80.6431, "matched_fragments": 391, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus pentosus", "strain": "strain=DSM 20314", "accession": "GCA_003641185.1", "taxid": 1589, "species_taxid": 1589, "relation_to_type": "type", "validated": true, "ani": 80.5277, "matched_fragments": 409, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus pentosus", "strain": "strain=DSM 20314", "accession": "GCA_001433755.1", "taxid": 1589, "species_taxid": 1589, "relation_to_type": "type", "validated": true, "ani": 80.4931, "matched_fragments": 409, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus plantarum subsp. plantarum", "strain": "strain=CGMCC 1.2437", "accession": "GCA_001434175.1", "taxid": 337330, "species_taxid": 1590, "relation_to_type": "type", "validated": true, "ani": 80.3661, "matched_fragments": 360, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus fabifermentans", "strain": "strain=DSM 21115", "accession": "GCA_000498955.2", "taxid": 483011, "species_taxid": 483011, "relation_to_type": "type", "validated": true, "ani": 80.2691, "matched_fragments": 380, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus plantarum", "strain": "strain=DSM 20174", "accession": "GCA_014131735.1", "taxid": 1590, "species_taxid": 1590, "relation_to_type": "type", "validated": true, "ani": 80.2323, "matched_fragments": 362, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus modestisalitolerans", "strain": "strain=NBRC 107235", "accession": "GCA_005405425.1", "taxid": 1457219, "species_taxid": 1457219, "relation_to_type": "type", "validated": true, "ani": 80.1375, "matched_fragments": 358, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus daowaiensis", "strain": "strain=203-3", "accession": "GCA_005405085.1", "taxid": 2559918, "species_taxid": 2559918, "relation_to_type": "type", "validated": true, "ani": 80.0068, "matched_fragments": 338, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus dongliensis", "strain": "strain=218-3", "accession": "GCA_005405105.1", "taxid": 2559919, "species_taxid": 2559919, "relation_to_type": "type", "validated": true, "ani": 79.9454, "matched_fragments": 339, "total_fragments": 957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Secundilactobacillus 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