{ "type": "genome", "identifier": "GCF_001439685.1", "organism": "Pseudomonas libanensis", "title": "Pseudomonas libanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001439685.1", "bioproject": "PRJNA224116", "biosample": "SAMN03328793", "wgs_master": "JYLH00000000.1", "refseq_category": "reference genome", "taxid": "75588", "species_taxid": "75588", "organism_name": "Pseudomonas libanensis", "infraspecific_name": "strain=DSM 17149", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/06", "asm_name": "G8685", "asm_submitter": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM", "gbrs_paired_asm": "GCA_001439685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/439/685/GCF_001439685.1_G8685", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6214234", "genome_size_ungapped": "6214234", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001439685.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "5655", "protein_coding_gene_count": "5502", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-06", "dateModified": "2015-11-06", "datePublished": "2015-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas libanensis" ], "sample_taxid": [ "75588" ], "sample_host_organism": [ "not collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Lebanon" ], "sample_host_location_id": [], "data_size": "1.745 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6214234", "Number of Sequences": "43", "Longest Sequences (bp)": "640011", "N50 (bp)": "326504", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "5559", "Average Protein Length": "330.6", "Coding Ratio (%)": "88.7", "Number of rRNAs": "4", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas libanensis", "strain": "strain=DSM 17149", "accession": "GCA_001439685.1", "taxid": 75588, "species_taxid": 75588, 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{ "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 87.7028, "matched_fragments": 1518, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 85.7856, "matched_fragments": 1450, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas karstica", "strain": "strain=CCM 7891", "accession": "GCA_009707515.1", "taxid": 1055468, "species_taxid": 1055468, "relation_to_type": "type", "validated": true, "ani": 85.029, "matched_fragments": 1295, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 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