{
    "type": "genome",
    "identifier": "GCF_001439725.1",
    "organism": "Pseudomonas synxantha",
    "title": "Pseudomonas synxantha",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001439725.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03328797",
        "wgs_master": "JYLJ00000000.1",
        "refseq_category": "na",
        "taxid": "47883",
        "species_taxid": "47883",
        "organism_name": "Pseudomonas synxantha",
        "infraspecific_name": "strain=DSM 18928",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/11/06",
        "asm_name": "G8689",
        "asm_submitter": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM",
        "gbrs_paired_asm": "GCA_001439725.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/439/725/GCF_001439725.1_G8689",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6792979",
        "genome_size_ungapped": "6792979",
        "gc_percent": "59.500000",
        "replicon_count": "0",
        "scaffold_count": "64",
        "contig_count": "64",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001439725.1-RS_2024_05_17",
        "annotation_date": "2024-05-17",
        "total_gene_count": "6264",
        "protein_coding_gene_count": "6072",
        "non_coding_gene_count": "77",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-11-06",
    "dateModified": "2015-11-06",
    "datePublished": "2015-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas synxantha"
        ],
        "sample_taxid": [
            "47883"
        ],
        "sample_host_organism": [
            "not collected"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Iowa"
        ],
        "sample_host_location_id": [],
        "data_size": "1.911 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6792979",
        "Number of Sequences": "64",
        "Longest Sequences (bp)": "694325",
        "N50 (bp)": "326087",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.7",
        "Number of CDSs": "6211",
        "Average Protein Length": "322.6",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudomonas synxantha",
                "strain": "strain=DSM 18928",
                "accession": "GCA_001439725.1",
                "taxid": 47883,
                "species_taxid": 47883,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2236,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas synxantha",
                "strain": "strain=NCTC10696",
                "accession": "GCA_901482615.1",
                "taxid": 47883,
                "species_taxid": 47883,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9983,
                "matched_fragments": 2235,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas synxantha",
                "strain": "strain=LMG 2190",
                "accession": "GCA_900105675.1",
                "taxid": 47883,
                "species_taxid": 47883,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9983,
                "matched_fragments": 2235,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas synxantha",
                "strain": "strain=NBRC 3913",
                "accession": "GCA_002091795.1",
                "taxid": 47883,
                "species_taxid": 47883,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9842,
                "matched_fragments": 2200,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas libanensis",
                "strain": "strain=DSM 17149",
                "accession": "GCA_001439685.1",
                "taxid": 75588,
                "species_taxid": 75588,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.7535,
                "matched_fragments": 1791,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas paralactis",
                "strain": "strain=DSM 29164",
                "accession": "GCA_001439735.1",
                "taxid": 1615673,
                "species_taxid": 1615673,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9043,
                "matched_fragments": 1610,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas marginalis",
                "strain": "strain=DSM 13124",
                "accession": "GCA_007858155.1",
                "taxid": 298,
                "species_taxid": 298,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 87.8759,
                "matched_fragments": 1615,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas pergaminensis",
                "strain": "strain=1008",
                "accession": "GCA_024112395.1",
                "taxid": 2853159,
                "species_taxid": 2853159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.7034,
                "matched_fragments": 1586,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lurida",
                "strain": "strain=LMG 21995",
                "accession": "GCA_002563895.1",
                "taxid": 244566,
                "species_taxid": 244566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.6244,
                "matched_fragments": 1540,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas spelaei",
                "strain": "strain=CCM 7893",
                "accession": "GCA_009724245.1",
                "taxid": 1055469,
                "species_taxid": 1055469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6926,
                "matched_fragments": 1460,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas karstica",
                "strain": "strain=CCM 7891",
                "accession": "GCA_009707515.1",
                "taxid": 1055468,
                "species_taxid": 1055468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9854,
                "matched_fragments": 1298,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas vranovensis",
                "strain": "strain=DSM 16006",
                "accession": "GCA_000425805.1",
                "taxid": 321661,
                "species_taxid": 321661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4778,
                "matched_fragments": 955,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas azotifigens",
                "strain": "strain=DSM 17556",
                "accession": "GCA_000425625.1",
                "taxid": 291995,
                "species_taxid": 291995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8822,
                "matched_fragments": 569,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas rhizoryzae",
                "strain": "strain=RY24",
                "accession": "GCA_005250615.1",
                "taxid": 2571129,
                "species_taxid": 2571129,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5158,
                "matched_fragments": 525,
                "total_fragments": 2236,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900105675.1",
                "gtdb_species": "s__Pseudomonas_E synxantha",
                "ani": 99.9983,
                "matched_fragments": 2235,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.7053,
                "mean_intra_species_ani": "98.15",
                "min_intra_species_ani": "96.46",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 14,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_001439685.1",
                "gtdb_species": "s__Pseudomonas_E libanensis",
                "ani": 95.7535,
                "matched_fragments": 1791,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.7053,
                "mean_intra_species_ani": "97.93",
                "min_intra_species_ani": "95.87",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_003851495.1",
                "gtdb_species": "s__Pseudomonas_E fluorescens_BB",
                "ani": 95.442,
                "matched_fragments": 1846,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.3929,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "97.70",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_009659625.1",
                "gtdb_species": "s__Pseudomonas_E haemolytica",
                "ani": 91.1957,
                "matched_fragments": 1647,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000263715.2",
                "gtdb_species": "s__Pseudomonas_E synxantha_A",
                "ani": 90.4592,
                "matched_fragments": 1709,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.66",
                "min_intra_species_ani": "97.33",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_001439735.1",
                "gtdb_species": "s__Pseudomonas_E paralactis",
                "ani": 89.9053,
                "matched_fragments": 1610,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.61",
                "min_intra_species_ani": "98.52",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001439845.1",
                "gtdb_species": "s__Pseudomonas_E lactis",
                "ani": 89.7777,
                "matched_fragments": 1702,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.24",
                "min_intra_species_ani": "95.50",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 30,
                "status": "-"
            },
            {
                "accession": "GCF_003851685.1",
                "gtdb_species": "s__Pseudomonas_E sp003851685",
                "ani": 88.2562,
                "matched_fragments": 1594,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003097075.1",
                "gtdb_species": "s__Pseudomonas_E sp003097075",
                "ani": 88.0339,
                "matched_fragments": 1507,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.77",
                "min_intra_species_ani": "98.77",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014207255.1",
                "gtdb_species": "s__Pseudomonas_E sp014207255",
                "ani": 87.9973,
                "matched_fragments": 1588,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "98.90",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001439695.1",
                "gtdb_species": "s__Pseudomonas_E veronii",
                "ani": 87.9407,
                "matched_fragments": 1562,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 43,
                "status": "-"
            },
            {
                "accession": "GCF_900107155.1",
                "gtdb_species": "s__Pseudomonas_E salomonii",
                "ani": 87.6832,
                "matched_fragments": 1629,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "96.43",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_019139815.1",
                "gtdb_species": "s__Pseudomonas_E sp900005815",
                "ani": 87.395,
                "matched_fragments": 1507,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.55",
                "min_intra_species_ani": "99.31",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_007858255.1",
                "gtdb_species": "s__Pseudomonas_E rhodesiae",
                "ani": 86.7661,
                "matched_fragments": 1508,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.21",
                "min_intra_species_ani": "97.47",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 28,
                "status": "-"
            },
            {
                "accession": "GCF_017980685.1",
                "gtdb_species": "s__Pseudomonas_E iridis",
                "ani": 82.7863,
                "matched_fragments": 1173,
                "total_fragments": 2236,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.83",
                "min_intra_species_ani": "96.38",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 9,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.248,
        "cell_length": 0.186,
        "doubling_h": -0.025,
        "growth_tmp": 29.0,
        "optimum_tmp": 20.0,
        "optimum_ph": 7.258,
        "genome_size": 6630959.5,
        "gc_content": 59.53,
        "coding_genes": 5885.0,
        "rRNA16S_genes": 5.319,
        "tRNA_genes": 68.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.926,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.073,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pseudomonas",
        "synxantha"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}