{ "type": "genome", "identifier": "GCF_001439735.1", "organism": "Pseudomonas paralactis", "title": "Pseudomonas paralactis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001439735.1", "bioproject": "PRJNA224116", "biosample": "SAMN03332051", "wgs_master": "JYLN00000000.1", "refseq_category": "reference genome", "taxid": "1615673", "species_taxid": "1615673", "organism_name": "Pseudomonas paralactis", "infraspecific_name": "strain=DSM 29164", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/06", "asm_name": "mG273", "asm_submitter": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM", "gbrs_paired_asm": "GCA_001439735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/439/735/GCF_001439735.1_mG273", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6015212", "genome_size_ungapped": "6015212", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001439735.1-RS_2024_12_01", "annotation_date": "2024-12-01", "total_gene_count": "5427", "protein_coding_gene_count": "5283", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-06", "dateModified": "2015-11-06", "datePublished": "2015-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas paralactis" ], "sample_taxid": [ "1615673" ], "sample_host_organism": [ "not collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Southern Germany" ], "sample_host_location_id": [], "data_size": "1.688 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6015212", "Number of Sequences": "37", "Longest Sequences (bp)": "884981", "N50 (bp)": "652815", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.7", "Number of CDSs": "5396", "Average Protein Length": "327.9", "Coding Ratio (%)": "88.2", "Number of rRNAs": "6", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas paralactis", "strain": "strain=DSM 29164", "accession": "GCA_001439735.1", "taxid": 1615673, "species_taxid": 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}, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=NBRC 12693", "accession": "GCA_002091515.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 87.5965, "matched_fragments": 1533, "total_fragments": 1986, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas salomonii", "strain": "strain=ICMP 14252", "accession": "GCA_900107155.1", "taxid": 191391, "species_taxid": 191391, "relation_to_type": "type", "validated": true, "ani": 87.574, "matched_fragments": 1579, "total_fragments": 1986, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 87.5206, "matched_fragments": 1533, "total_fragments": 1986, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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"GCA_009707515.1", "taxid": 1055468, "species_taxid": 1055468, "relation_to_type": "type", "validated": true, "ani": 84.8676, "matched_fragments": 1281, "total_fragments": 1986, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001439735.1", "gtdb_species": "s__Pseudomonas_E paralactis", "ani": 100.0, "matched_fragments": 1985, "total_fragments": 1986, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000263715.2", "gtdb_species": "s__Pseudomonas_E synxantha_A", "ani": 93.5353, "matched_fragments": 1719, "total_fragments": 1986, 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