{ "type": "genome", "identifier": "GCF_001441635.1", "organism": "Roseovarius indicus", "title": "Roseovarius indicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001441635.1", "bioproject": "PRJNA224116", "biosample": "SAMN03481072", "wgs_master": "LAXI00000000.1", "refseq_category": "na", "taxid": "540747", "species_taxid": "540747", "organism_name": "Roseovarius indicus", "infraspecific_name": "strain=B108", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/09", "asm_name": "ASM144163v1", "asm_submitter": "Third Institute of Oceanography", "gbrs_paired_asm": "GCA_001441635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/441/635/GCF_001441635.1_ASM144163v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6063628", "genome_size_ungapped": "6063628", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "122", "contig_count": "122", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001441635.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5983", "protein_coding_gene_count": "5862", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-09", "dateModified": "2015-11-09", "datePublished": "2015-11-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseovarius indicus" ], "sample_taxid": [ "540747" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "1.679 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6063628", "Number of Sequences": "122", "Longest Sequences (bp)": "675683", "N50 (bp)": "200007", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.4", "Number of CDSs": "5861", "Average Protein Length": "308.4", "Coding Ratio (%)": "89.4", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1966, "total_fragments": 1973, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_900112725.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 99.998, "matched_fragments": 1971, "total_fragments": 1973, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 99.9974, "matched_fragments": 1972, "total_fragments": 1973, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseovarius atlanticus", "strain": "strain=R12B", "accession": "GCA_001441615.1", "taxid": 1641875, "species_taxid": 1641875, "relation_to_type": "type", "validated": true, "ani": 81.5923, "matched_fragments": 827, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius confluentis", "strain": "strain=SAG6", "accession": "GCA_002917925.1", "taxid": 1852027, "species_taxid": 1852027, "relation_to_type": "type", "validated": true, "ani": 80.716, "matched_fragments": 752, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=CECT 8110", "accession": "GCA_900172255.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 80.6301, "matched_fragments": 685, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=DSM 29507", "accession": "GCA_003634925.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 80.5702, "matched_fragments": 685, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=DSM 29589", "accession": "GCA_900142665.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 80.0449, "matched_fragments": 662, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 80.004, "matched_fragments": 662, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 79.2941, "matched_fragments": 589, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 79.2868, "matched_fragments": 595, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 79.2455, "matched_fragments": 598, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius aestuariivivens", "strain": "strain=GHTF-24", "accession": "GCA_004761875.1", "taxid": 1888910, "species_taxid": 1888910, "relation_to_type": "type", "validated": true, "ani": 79.2014, "matched_fragments": 568, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 78.8156, "matched_fragments": 295, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 78.7766, "matched_fragments": 513, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 78.3829, "matched_fragments": 535, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 78.1409, "matched_fragments": 427, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella sediminis", "strain": "strain=DP3N28-2", "accession": "GCA_019218285.1", "taxid": 2836866, "species_taxid": 2836866, "relation_to_type": "type", "validated": true, "ani": 77.8686, "matched_fragments": 441, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 77.3868, "matched_fragments": 306, "total_fragments": 1973, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008728195.1", "gtdb_species": "s__Roseovarius indicus", "ani": 99.9974, "matched_fragments": 1972, "total_fragments": 1973, "gtdb_taxonomy": 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