{ "type": "genome", "identifier": "GCF_001445835.1", "organism": "Wenjunlia vitaminophila", "title": "Wenjunlia vitaminophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Oak Ridge National Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001445835.1", "bioproject": "PRJNA224116", "biosample": "SAMN04201512", "wgs_master": "LLZU00000000.1", "refseq_category": "na", "taxid": "76728", "species_taxid": "76728", "organism_name": "Wenjunlia vitaminophila", "infraspecific_name": "strain=ATCC 31673", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/18", "asm_name": "ASM144583v1", "asm_submitter": "Oak Ridge National Laboratory", "gbrs_paired_asm": "GCA_001445835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/445/835/GCF_001445835.1_ASM144583v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6549812", "genome_size_ungapped": "6549812", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001445835.1-RS_2025_01_02", "annotation_date": "2025-01-02", "total_gene_count": "5593", "protein_coding_gene_count": "5392", "non_coding_gene_count": "70", "pubmed_id": "26798098" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-18", "dateModified": "2015-11-18", "datePublished": "2015-11-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Wenjunlia vitaminophila" ], "sample_taxid": [ "76728" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Chikuma River, Nagano City" ], "sample_host_location_id": [], "data_size": "1.757 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6549812", "Number of Sequences": "39", "Longest Sequences (bp)": "769158", "N50 (bp)": "249406", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.0", "Number of CDSs": "5663", "Average Protein Length": "332.0", "Coding Ratio (%)": "86.1", "Number of rRNAs": "5", "Number of tRNAs": "70", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Wenjunlia vitaminophila", "strain": "strain=ATCC 31673", "accession": "GCA_001445835.1", "taxid": 76728, "species_taxid": 76728, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2157, "total_fragments": 2164, 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79.855, "matched_fragments": 904, "total_fragments": 2164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__SCUT-3", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003144095.1", "gtdb_species": "s__Streptomyces sp003144095", "ani": 79.8073, "matched_fragments": 828, "total_fragments": 2164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004684805.1", "gtdb_species": "s__Streptomyces palmae", "ani": 79.7992, "matched_fragments": 830, 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