{ "type": "genome", "identifier": "GCF_001457055.1", "organism": "Priestia veravalensis", "title": "Priestia veravalensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-National Chemical Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001457055.1", "bioproject": "PRJNA224116", "biosample": "SAMN04263914", "wgs_master": "LNQP00000000.1", "refseq_category": "reference genome", "taxid": "1414648", "species_taxid": "1414648", "organism_name": "Priestia veravalensis", "infraspecific_name": "strain=SGD-V-76", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/12/04", "asm_name": "ASM145705v1", "asm_submitter": "CSIR-National Chemical Laboratory", "gbrs_paired_asm": "GCA_001457055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/457/055/GCF_001457055.1_ASM145705v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4114189", "genome_size_ungapped": "4112864", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "146", "contig_count": "158", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001457055.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "4575", "protein_coding_gene_count": "4339", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-12-04", "dateModified": "2015-12-04", "datePublished": "2015-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Priestia veravalensis" ], "sample_taxid": [ "1414648" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Veraval coast" ], "sample_host_location_id": [], "data_size": "1.168 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4114189", "Number of Sequences": "146", "Longest Sequences (bp)": "384985", "N50 (bp)": "50371", "Gap Ratio (%)": "0.032206", "GCcontent (%)": "37.7", "Number of CDSs": "4295", "Average Protein Length": "267.1", "Coding Ratio (%)": "83.6", "Number of rRNAs": "5", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Niallia alba", "strain": "strain=UniB3", "accession": "GCA_012933555.1", "taxid": 2729105, "species_taxid": 2729105, "relation_to_type": "type", "validated": true, "ani": 81.7384, "matched_fragments": 147, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=ATCC 14581", "accession": "GCA_006094495.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 79.8319, "matched_fragments": 430, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=NBRC 15308", "accession": "GCA_001591525.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 79.7818, "matched_fragments": 425, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=NCTC10342", "accession": "GCA_900445485.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 79.7708, "matched_fragments": 421, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=ATCC 14581", "accession": "GCA_000832985.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 79.758, "matched_fragments": 436, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=ATCC 14581", "accession": "GCA_900113355.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4575, "matched_fragments": 421, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia aryabhattai", "strain": "strain=B8W22", "accession": "GCA_000956595.1", "taxid": 412384, "species_taxid": 412384, "relation_to_type": "type", "validated": true, "ani": 79.3, "matched_fragments": 408, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus iocasae", "strain": "strain=DSM 104297", "accession": "GCA_016909075.1", "taxid": 2291674, "species_taxid": 2291674, "relation_to_type": "type", "validated": true, "ani": 78.3913, "matched_fragments": 278, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia koreensis", "strain": "strain=DSM 16467", "accession": "GCA_001274935.1", "taxid": 284581, "species_taxid": 284581, "relation_to_type": "type", "validated": true, "ani": 77.5529, "matched_fragments": 205, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus cereus", "strain": "strain=ATCC 14579", "accession": "GCA_000007825.1", "taxid": 1396, "species_taxid": 1396, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5008, "matched_fragments": 99, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus tepidiphilus", "strain": "strain=SYSU G01002", "accession": "GCA_009466385.1", "taxid": 2652445, "species_taxid": 2652445, "relation_to_type": "type", "validated": true, "ani": 77.2733, "matched_fragments": 84, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus tropicus", "strain": "strain=N24", "accession": "GCA_001884035.1", "taxid": 2026188, "species_taxid": 2026188, "relation_to_type": "type", "validated": true, "ani": 77.2692, "matched_fragments": 112, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia taiwanensis", "strain": "strain=DSM 27845", "accession": "GCA_016908755.1", "taxid": 1347902, "species_taxid": 1347902, "relation_to_type": "type", "validated": true, "ani": 77.1978, "matched_fragments": 89, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus frigoritolerans", "strain": "strain=FJAT-2396", "accession": "GCA_001636405.1", "taxid": 450367, "species_taxid": 450367, "relation_to_type": "type", "validated": true, "ani": 77.1953, "matched_fragments": 63, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutcliffiella halmapala", "strain": "strain=DSM 8723", "accession": "GCA_002019665.1", "taxid": 79882, "species_taxid": 79882, "relation_to_type": "type", "validated": true, "ani": 77.1256, "matched_fragments": 101, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia taiwanensis", "strain": "strain=CGMCC 1.12698", "accession": "GCA_014638355.1", "taxid": 1347902, "species_taxid": 1347902, "relation_to_type": "type", "validated": true, "ani": 77.1241, "matched_fragments": 85, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_022630575.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 77.1153, "matched_fragments": 117, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus frigoritolerans", "strain": "strain=DSM 8801", "accession": "GCA_024169475.1", "taxid": 450367, "species_taxid": 450367, "relation_to_type": "type", "validated": true, "ani": 77.1033, "matched_fragments": 64, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus luteolus", "strain": "strain=DSM 22388", "accession": "GCA_017873715.1", "taxid": 682179, "species_taxid": 682179, "relation_to_type": "type", "validated": true, "ani": 77.0571, "matched_fragments": 111, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus sanguinis", "strain": "strain=BML-BC004", "accession": "GCA_018332475.1", "taxid": 2817476, "species_taxid": 2817476, "relation_to_type": "type", "validated": true, "ani": 76.9993, "matched_fragments": 109, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus luteolus", "strain": "strain=YIM 93174", "accession": "GCA_014982515.1", "taxid": 682179, "species_taxid": 682179, "relation_to_type": "type", "validated": true, "ani": 76.845, "matched_fragments": 111, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus massilionigeriensis", "strain": "strain=Marseille-P2384", "accession": "GCA_900117315.1", "taxid": 1805475, "species_taxid": 1805475, "relation_to_type": "type", "validated": true, "ani": 76.7526, "matched_fragments": 81, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacillus okhensis", "strain": "strain=Kh10-101", "accession": "GCA_000787375.1", "taxid": 333138, "species_taxid": 333138, "relation_to_type": "type", "validated": true, "ani": 76.7513, "matched_fragments": 63, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus aquiflavi", "strain": "strain=3H-10", "accession": "GCA_011008855.1", "taxid": 2672567, "species_taxid": 2672567, "relation_to_type": "type", "validated": true, "ani": 76.702, "matched_fragments": 76, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus vitaminiphilus", "strain": "strain=CGMCC 1.8979", "accession": "GCA_003259935.1", "taxid": 581036, "species_taxid": 581036, "relation_to_type": "type", "validated": true, "ani": 76.5791, "matched_fragments": 92, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus karvacharensis", "strain": "strain=K1", "accession": "GCA_001996285.1", "taxid": 1919277, "species_taxid": 1919277, "relation_to_type": "type", "validated": true, "ani": 76.3745, "matched_fragments": 83, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001591565.1", "gtdb_species": "s__Priestia flexa", "ani": 98.9472, "matched_fragments": 1026, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 15, "status": "conclusive" }, { "accession": "GCF_002265635.1", "gtdb_species": "s__Priestia aryabhattai_A", "ani": 92.001, "matched_fragments": 1108, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_008180335.1", "gtdb_species": "s__Priestia megaterium_B", "ani": 80.0821, "matched_fragments": 501, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000832985.1", "gtdb_species": "s__Priestia megaterium", "ani": 79.734, "matched_fragments": 438, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.5311, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "95.69", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.73", "num_clustered_genomes": 151, "status": "-" }, { "accession": "GCF_009497655.1", "gtdb_species": "s__Priestia megaterium_A", "ani": 79.3548, "matched_fragments": 416, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 96.022, "mean_intra_species_ani": "98.08", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCF_000956595.1", "gtdb_species": "s__Priestia aryabhattai", "ani": 79.3009, "matched_fragments": 409, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 96.022, "mean_intra_species_ani": "97.07", "min_intra_species_ani": "96.58", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_003184905.1", "gtdb_species": "s__Priestia sp003184905", "ani": 78.6446, "matched_fragments": 302, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016909075.1", "gtdb_species": "s__Priestia iocasae", "ani": 78.3866, "matched_fragments": 279, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001274935.1", "gtdb_species": "s__Bacillus_AG koreensis", "ani": 77.5143, "matched_fragments": 205, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Bacillus_AG", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002571225.1", "gtdb_species": "s__Bacillus_A sp002571225", "ani": 77.3194, "matched_fragments": 118, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014217835.1", "gtdb_species": "s__Metabacillus litoralis_A", "ani": 77.2889, "matched_fragments": 123, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.81", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009466385.1", "gtdb_species": "s__Bacillus_BN tepidiphilus", "ani": 77.2712, "matched_fragments": 84, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Bacillus_BN", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001884035.1", "gtdb_species": "s__Bacillus_A tropicus", "ani": 77.2707, "matched_fragments": 111, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.3658, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 109, "status": "-" }, { "accession": "GCF_014638355.1", "gtdb_species": "s__Priestia_D taiwanensis", "ani": 77.1234, "matched_fragments": 83, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Priestia_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Priestia", "veravalensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }