{ "type": "genome", "identifier": "GCF_001457415.1", "organism": "Gorillibacterium timonense", "title": "Gorillibacterium timonense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001457415.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3539502", "wgs_master": "CYUM00000000.1", "refseq_category": "reference genome", "taxid": "1689269", "species_taxid": "1689269", "organism_name": "Gorillibacterium timonense", "infraspecific_name": "strain=SN4", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/04", "asm_name": "Gorillibacterium timonense", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_001457415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/457/415/GCF_001457415.1_Gorillibacterium_timonense", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5263775", "genome_size_ungapped": "5263339", "gc_percent": "53.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001457415.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4799", "protein_coding_gene_count": "4660", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-04", "dateModified": "2015-11-04", "datePublished": "2015-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Gorillibacterium timonense" ], "sample_taxid": [ "1689269" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.494 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5263775", "Number of Sequences": "7", "Longest Sequences (bp)": "2425470", "N50 (bp)": "1130530", "Gap Ratio (%)": "0.008359", "GCcontent (%)": "53.3", "Number of CDSs": "4816", "Average Protein Length": "314.6", "Coding Ratio (%)": "86.4", "Number of rRNAs": "7", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gorillibacterium timonense", "strain": "strain=SN4", "accession": "GCA_001457415.1", "taxid": 1689269, "species_taxid": 1689269, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1752, "total_fragments": 1752, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gorillibacterium massiliense", "strain": "strain=G5", "accession": "GCA_000455485.2", "taxid": 1280390, "species_taxid": 1280390, "relation_to_type": "type", "validated": true, "ani": 77.731, "matched_fragments": 202, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus lutimineralis", "strain": "strain=MBLB1234", "accession": "GCA_003991425.1", "taxid": 2707005, "species_taxid": 2707005, "relation_to_type": "type", "validated": true, "ani": 77.3993, "matched_fragments": 56, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 76.958, "matched_fragments": 132, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella xylanilytica", "strain": "strain=DSM 25239", "accession": "GCA_014212175.1", "taxid": 557555, "species_taxid": 557555, "relation_to_type": "type", "validated": true, "ani": 76.8883, "matched_fragments": 148, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 76.8692, "matched_fragments": 114, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albicereus", "strain": "strain=UniB2", "accession": "GCA_012676905.1", "taxid": 2726185, "species_taxid": 2726185, "relation_to_type": "type", "validated": true, "ani": 76.8215, "matched_fragments": 139, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobacillus composti", "strain": "strain=KWC4", "accession": "GCA_000227705.3", "taxid": 377615, "species_taxid": 377615, "relation_to_type": "type", "validated": true, "ani": 76.7129, "matched_fragments": 128, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus flagellatus", "strain": "strain=DXL2", "accession": "GCA_003217775.1", "taxid": 2211139, "species_taxid": 2211139, "relation_to_type": "type", "validated": true, "ani": 76.6497, "matched_fragments": 140, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella thermotolerans", "strain": "strain=DSM 17683", "accession": "GCA_000429825.1", "taxid": 329858, "species_taxid": 329858, "relation_to_type": "type", "validated": true, "ani": 76.5213, "matched_fragments": 133, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus artemisiicola", "strain": "strain=MWE-103", "accession": "GCA_017652985.1", "taxid": 1172618, 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"below_threshold" }, { "organism_name": "Paenibacillus humicus", "strain": "strain=NBRC 102415", "accession": "GCA_004000905.1", "taxid": 412861, "species_taxid": 412861, "relation_to_type": "type", "validated": true, "ani": 76.0916, "matched_fragments": 147, "total_fragments": 1752, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001457415.1", "gtdb_species": "s__Gorillibacterium timonense", "ani": 100.0, "matched_fragments": 1752, "total_fragments": 1752, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Gorillibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000455485.1", "gtdb_species": 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