{ "type": "genome", "identifier": "GCF_001458375.1", "organism": "Tropicibacter naphthalenivorans", "title": "Tropicibacter naphthalenivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001458375.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3532112", "wgs_master": "CYSE00000000.1", "refseq_category": "reference genome", "taxid": "441103", "species_taxid": "441103", "organism_name": "Tropicibacter naphthalenivorans", "infraspecific_name": "strain=CECT 7648", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/09", "asm_name": "Tr.naphthalenivorans_CECT7648_Spades_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_001458375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/458/375/GCF_001458375.1_Tr.naphthalenivorans_CECT7648_Spades_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4459382", "genome_size_ungapped": "4459190", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001458375.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4280", "protein_coding_gene_count": "4170", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-09", "dateModified": "2015-11-09", "datePublished": "2015-11-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Tropicibacter naphthalenivorans" ], "sample_taxid": [ "441103" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indonesia" ], "sample_host_location_id": [], "data_size": "1.237 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4459382", "Number of Sequences": "33", "Longest Sequences (bp)": "897227", "N50 (bp)": "742329", "Gap Ratio (%)": "0.004306", "GCcontent (%)": "63.2", "Number of CDSs": "4233", "Average Protein Length": "317.7", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mameliella alba", "strain": "strain=CGMCC 1.7290", "accession": "GCA_900101505.1", "taxid": 561184, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagimonas phthalicica", "strain": "strain=DSM 26923", "accession": "GCA_004364805.1", "taxid": 1037362, "species_taxid": 1037362, "relation_to_type": "type", "validated": true, "ani": 78.2466, "matched_fragments": 506, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nubinhibens", "strain": "strain=ISM", "accession": "GCA_000152625.1", "taxid": 314263, "species_taxid": 314263, "relation_to_type": "type", "validated": true, "ani": 78.2377, "matched_fragments": 393, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 78.2196, "matched_fragments": 504, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=DSM 18065", "accession": "GCA_000688295.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 78.2161, "matched_fragments": 410, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=CGMCC 1.6293", "accession": "GCA_014645095.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 78.2138, "matched_fragments": 411, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax marinus", "strain": "strain=DSM 27511", "accession": "GCA_900109705.1", "taxid": 1379903, "species_taxid": 1379903, "relation_to_type": "type", "validated": true, "ani": 78.0956, "matched_fragments": 436, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassococcus 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2499833, "species_taxid": 2499833, "relation_to_type": "type", "validated": true, "ani": 77.6945, "matched_fragments": 378, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita hallyeonensis", "strain": "strain=DSM 29431", "accession": "GCA_900129875.1", "taxid": 996342, "species_taxid": 996342, "relation_to_type": "type", "validated": true, "ani": 77.5333, "matched_fragments": 363, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum dunhuangense", "strain": "strain=YYQ-30", "accession": "GCA_013093415.1", "taxid": 1505036, "species_taxid": 1505036, "relation_to_type": "type", "validated": true, "ani": 77.2671, "matched_fragments": 267, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Tropicibacter", "naphthalenivorans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }