{ "type": "genome", "identifier": "GCF_001458595.1", "organism": "Clostridium neonatale", "title": "Clostridium neonatale", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001458595.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3610495", "wgs_master": "CZLD00000000.1", "refseq_category": "na", "taxid": "137838", "species_taxid": "137838", "organism_name": "Clostridium neonatale", "infraspecific_name": "strain=LCDC no.99-A-005", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/12/03", "asm_name": "Clostridium neonatale", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_001458595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/458/595/GCF_001458595.1_Clostridium_neonatale", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4710844", "genome_size_ungapped": "4710619", "gc_percent": "28.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001458595.1-RS_2024_03_31", "annotation_date": "2024-03-31", "total_gene_count": "4314", "protein_coding_gene_count": "4154", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-12-03", "dateModified": "2015-12-03", "datePublished": "2015-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium neonatale" ], "sample_taxid": [ "137838" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.273 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4710844", "Number of Sequences": "17", "Longest Sequences (bp)": "3165521", "N50 (bp)": "3165521", "Gap Ratio (%)": "0.005477", "GCcontent (%)": "28.4", "Number of CDSs": "4260", "Average Protein Length": "307.2", "Coding Ratio (%)": "83.3", "Number of rRNAs": "7", "Number of tRNAs": "70", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium neonatale", "strain": "strain=LCDC no.99-A-005", "accession": "GCA_001458595.1", "taxid": 137838, "species_taxid": 137838, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1563, "total_fragments": 1563, "ani_threshold": 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"ani": 77.3627, "matched_fragments": 272, "total_fragments": 1563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium nigeriense", "strain": "strain=Marseille-P2414", "accession": "GCA_900086595.1", "taxid": 1805470, "species_taxid": 1805470, "relation_to_type": "type", "validated": true, "ani": 77.1551, "matched_fragments": 276, "total_fragments": 1563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidibacter thalassicus", "strain": "strain=DSM 15285", "accession": "GCA_900129915.1", "taxid": 214905, "species_taxid": 214905, "relation_to_type": "type", "validated": true, "ani": 75.209, "matched_fragments": 99, "total_fragments": 1563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Abyssisolibacter fermentans", "strain": "strain=MCWD3", "accession": "GCA_001559865.1", "taxid": 1766203, "species_taxid": 1766203, "relation_to_type": "type", "validated": true, "ani": 74.8701, "matched_fragments": 103, 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