{ "type": "genome", "identifier": "GCF_001463845.1", "organism": "Fulvimarina pelagi", "title": "Fulvimarina pelagi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Graduate School of Life Sciences, Tohoku University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001463845.1", "bioproject": "PRJNA224116", "biosample": "SAMD00028750", "wgs_master": "BBWO00000000.1", "refseq_category": "na", "taxid": "217511", "species_taxid": "217511", "organism_name": "Fulvimarina pelagi", "infraspecific_name": "strain=DSM 15513", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/09", "asm_name": "ASM146384v1", "asm_submitter": "Graduate School of Life Sciences, Tohoku University", "gbrs_paired_asm": "GCA_001463845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/463/845/GCF_001463845.1_ASM146384v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3770082", "genome_size_ungapped": "3770082", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "61", "contig_count": "61", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001463845.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3528", "protein_coding_gene_count": "3412", "non_coding_gene_count": "54", "pubmed_id": "26534993" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-09", "dateModified": "2015-11-09", "datePublished": "2015-11-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Fulvimarina pelagi" ], "sample_taxid": [ "217511" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean: Bermuda Atlantic Time Series (BATS) station in the western Sargasso Sea" ], "sample_host_location_id": [], "data_size": "1.058 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3769698", "Number of Sequences": "56", "Longest Sequences (bp)": "555501", "N50 (bp)": "313774", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.3", "Number of CDSs": "3480", "Average Protein Length": "309.4", "Coding Ratio (%)": "85.7", "Number of rRNAs": "4", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fulvimarina pelagi", "strain": "strain=DSM 15513", "accession": "GCA_001463845.1", "taxid": 217511, "species_taxid": 217511, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1229, "total_fragments": 1235, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Fulvimarina pelagi", "strain": "strain=HTCC2506", "accession": "GCA_000153705.1", "taxid": 217511, "species_taxid": 217511, "relation_to_type": "type", "validated": true, "ani": 99.9954, "matched_fragments": 1233, "total_fragments": 1235, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Fulvimarina endophytica", "strain": "strain=85", "accession": "GCA_003403015.1", "taxid": 2293836, "species_taxid": 2293836, "relation_to_type": "type", "validated": true, "ani": 79.7613, "matched_fragments": 628, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas manganoxydans", "strain": "strain=SI85-9A1", "accession": "GCA_000153465.1", "taxid": 651183, "species_taxid": 651183, "relation_to_type": "type", "validated": true, "ani": 78.5953, "matched_fragments": 429, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella endophytica", "strain": "strain=CBS5Q-3", "accession": "GCA_004519335.1", "taxid": 2558362, "species_taxid": 2558362, "relation_to_type": "type", "validated": true, "ani": 78.5569, "matched_fragments": 468, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella pacifica", "strain": "strain=40Bstr34", "accession": "GCA_010500815.1", "taxid": 2696469, "species_taxid": 2696469, "relation_to_type": "type", "validated": true, "ani": 78.4589, "matched_fragments": 449, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas coralicida", "strain": "strain=DSM 14790", "accession": "GCA_001463825.1", "taxid": 182270, "species_taxid": 182270, "relation_to_type": "type", "validated": true, "ani": 78.3885, "matched_fragments": 447, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=DSM 103570", "accession": "GCA_014196845.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 78.3738, "matched_fragments": 403, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella sonneratiae", "strain": "strain=MQZ13P-4", "accession": "GCA_017353515.1", "taxid": 2816856, "species_taxid": 2816856, "relation_to_type": "type", "validated": true, "ani": 78.3601, "matched_fragments": 457, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 78.3465, "matched_fragments": 400, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas coralicida", "strain": "strain=DSM 14790", "accession": "GCA_000421645.1", "taxid": 182270, "species_taxid": 182270, "relation_to_type": "type", "validated": true, "ani": 78.3437, "matched_fragments": 451, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas aggregata", "strain": "strain=KCTC 52919", "accession": "GCA_010500835.1", "taxid": 2047720, "species_taxid": 2047720, "relation_to_type": "type", "validated": true, "ani": 78.3211, "matched_fragments": 416, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas pseudogalii", "strain": "strain=DSM 102238", "accession": "GCA_014196835.1", "taxid": 1744844, "species_taxid": 1744844, "relation_to_type": "type", "validated": true, "ani": 77.7612, "matched_fragments": 316, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella daejeonensis", "strain": "strain=JCM 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