{
    "type": "genome",
    "identifier": "GCF_001467045.1",
    "organism": "Legionella bozemanae",
    "title": "Legionella bozemanae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Tel Aviv University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001467045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04274766",
        "wgs_master": "LNXU00000000.1",
        "refseq_category": "na",
        "taxid": "447",
        "species_taxid": "447",
        "organism_name": "Legionella bozemanae",
        "infraspecific_name": "strain=WIGA",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/12/15",
        "asm_name": "ASM146704v1",
        "asm_submitter": "Tel Aviv University",
        "gbrs_paired_asm": "GCA_001467045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/467/045/GCF_001467045.1_ASM146704v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4124313",
        "genome_size_ungapped": "4121711",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "61",
        "contig_count": "61",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-29",
        "total_gene_count": "3718",
        "protein_coding_gene_count": "3611",
        "non_coding_gene_count": "52",
        "pubmed_id": "26752266"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-12-15",
    "dateModified": "2015-12-15",
    "datePublished": "2015-12-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Legionella bozemanae"
        ],
        "sample_taxid": [
            "447"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "legionellosis"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Key West, Florida"
        ],
        "sample_host_location_id": [],
        "data_size": "1.171 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4124313",
        "Number of Sequences": "61",
        "Longest Sequences (bp)": "702126",
        "N50 (bp)": "366528",
        "Gap Ratio (%)": "0.063089",
        "GCcontent (%)": "37.9",
        "Number of CDSs": "3604",
        "Average Protein Length": "322.1",
        "Coding Ratio (%)": "84.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Legionella bozemanae",
                "strain": "strain=WIGA",
                "accession": "GCA_001467045.1",
                "taxid": 447,
                "species_taxid": 447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1346,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella bozemanae",
                "strain": "strain=NCTC11368",
                "accession": "GCA_900450575.1",
                "taxid": 447,
                "species_taxid": 447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.964,
                "matched_fragments": 1343,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella bozemanae",
                "strain": "strain=ATCC 33217",
                "accession": "GCA_001648595.1",
                "taxid": 447,
                "species_taxid": 447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9589,
                "matched_fragments": 1313,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella bozemanae",
                "strain": "strain=WIGA",
                "accession": "GCA_900640135.1",
                "taxid": 447,
                "species_taxid": 447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9407,
                "matched_fragments": 1324,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella parisiensis",
                "strain": "strain=PF-209-C-C2",
                "accession": "GCA_001467945.1",
                "taxid": 45071,
                "species_taxid": 45071,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.3375,
                "matched_fragments": 1077,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella tucsonensis",
                "strain": "strain=ATCC 49180",
                "accession": "GCA_001468035.1",
                "taxid": 40335,
                "species_taxid": 40335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2804,
                "matched_fragments": 938,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001648595.1",
                "gtdb_species": "s__Legionella bozemanae",
                "ani": 99.9589,
                "matched_fragments": 1313,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001467945.1",
                "gtdb_species": "s__Legionella parisiensis",
                "ani": 90.3375,
                "matched_fragments": 1077,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001468035.1",
                "gtdb_species": "s__Legionella tucsonensis",
                "ani": 89.2804,
                "matched_fragments": 938,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001467525.1",
                "gtdb_species": "s__Legionella anisa",
                "ani": 89.0881,
                "matched_fragments": 1029,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.61",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_014109805.1",
                "gtdb_species": "s__Legionella sp014109805",
                "ani": 88.8297,
                "matched_fragments": 1048,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.324,
        "cell_length": 0.259,
        "doubling_h": 0.38,
        "growth_tmp": 36.183,
        "optimum_tmp": 33.77,
        "optimum_ph": 6.9,
        "genome_size": 3482612.786,
        "gc_content": 38.268,
        "coding_genes": 2803.262,
        "rRNA16S_genes": 3.5,
        "tRNA_genes": 42.766,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.888,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Legionella",
        "bozemanae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}