{
    "type": "genome",
    "identifier": "GCF_001467545.1",
    "organism": "Legionella cincinnatiensis",
    "title": "Legionella cincinnatiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Tel Aviv University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001467545.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04274769",
        "wgs_master": "LNXX00000000.1",
        "refseq_category": "na",
        "taxid": "28085",
        "species_taxid": "28085",
        "organism_name": "Legionella cincinnatiensis",
        "infraspecific_name": "strain=CDC#72-OH-14",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/12/15",
        "asm_name": "ASM146754v1",
        "asm_submitter": "Tel Aviv University",
        "gbrs_paired_asm": "GCA_001467545.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/467/545/GCF_001467545.1_ASM146754v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4053879",
        "genome_size_ungapped": "4052168",
        "gc_percent": "37.000000",
        "replicon_count": "0",
        "scaffold_count": "54",
        "contig_count": "54",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001467545.1-RS_2024_03_27",
        "annotation_date": "2024-03-27",
        "total_gene_count": "3525",
        "protein_coding_gene_count": "3415",
        "non_coding_gene_count": "49",
        "pubmed_id": "26752266"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-12-15",
    "dateModified": "2015-12-15",
    "datePublished": "2015-12-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Legionella cincinnatiensis"
        ],
        "sample_taxid": [
            "28085"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "legionellosis",
            "Renal transplantrecipient"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Cincinnati, Ohio"
        ],
        "sample_host_location_id": [],
        "data_size": "1.148 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4053879",
        "Number of Sequences": "54",
        "Longest Sequences (bp)": "602394",
        "N50 (bp)": "337180",
        "Gap Ratio (%)": "0.042206",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "3435",
        "Average Protein Length": "333.3",
        "Coding Ratio (%)": "84.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Legionella cincinnatiensis",
                "strain": "strain=CDC#72-OH-14",
                "accession": "GCA_001467545.1",
                "taxid": 28085,
                "species_taxid": 28085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1329,
                "total_fragments": 1329,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella cincinnatiensis",
                "strain": "strain=NCTC12438",
                "accession": "GCA_900452415.1",
                "taxid": 28085,
                "species_taxid": 28085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9723,
                "matched_fragments": 1327,
                "total_fragments": 1329,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella santicrucis",
                "strain": "strain=SC-63-C7",
                "accession": "GCA_900639975.1",
                "taxid": 45074,
                "species_taxid": 45074,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.7918,
                "matched_fragments": 1077,
                "total_fragments": 1329,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella santicrucis",
                "strain": "strain=SC-63-C7",
                "accession": "GCA_001468135.1",
                "taxid": 45074,
                "species_taxid": 45074,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.7366,
                "matched_fragments": 1095,
                "total_fragments": 1329,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella sainthelensi",
                "strain": "strain=Mt.St.Helens-4",
                "accession": "GCA_001468105.1",
                "taxid": 28087,
                "species_taxid": 28087,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1734,
                "matched_fragments": 1070,
                "total_fragments": 1329,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella longbeachae",
                "strain": "strain=FDAARGOS_1481",
                "accession": "GCA_019930685.1",
                "taxid": 450,
                "species_taxid": 450,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.953,
                "matched_fragments": 1039,
                "total_fragments": 1329,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900452415.1",
                "gtdb_species": "s__Legionella cincinnatiensis",
                "ani": 99.9723,
                "matched_fragments": 1327,
                "total_fragments": 1329,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001468135.1",
                "gtdb_species": "s__Legionella santicrucis",
                "ani": 90.7823,
                "matched_fragments": 1090,
                "total_fragments": 1329,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900637685.1",
                "gtdb_species": "s__Legionella sainthelensi",
                "ani": 88.1479,
                "matched_fragments": 1074,
                "total_fragments": 1329,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.79",
                "min_intra_species_ani": "95.71",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_004283175.1",
                "gtdb_species": "s__Legionella longbeachae",
                "ani": 87.9882,
                "matched_fragments": 1012,
                "total_fragments": 1329,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.77",
                "min_intra_species_ani": "99.22",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_001467695.1",
                "gtdb_species": "s__Legionella gratiana",
                "ani": 86.2337,
                "matched_fragments": 981,
                "total_fragments": 1329,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.324,
        "cell_length": 0.259,
        "doubling_h": 0.38,
        "growth_tmp": 37.0,
        "optimum_tmp": 33.77,
        "optimum_ph": 6.9,
        "genome_size": 4047605.0,
        "gc_content": 38.268,
        "coding_genes": 2803.262,
        "rRNA16S_genes": 3.5,
        "tRNA_genes": 42.766,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.888,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Legionella",
        "cincinnatiensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}