{
    "type": "genome",
    "identifier": "GCF_001467695.1",
    "organism": "Legionella gratiana",
    "title": "Legionella gratiana",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Tel Aviv University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001467695.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04274776",
        "wgs_master": "LNYE00000000.1",
        "refseq_category": "na",
        "taxid": "45066",
        "species_taxid": "45066",
        "organism_name": "Legionella gratiana",
        "infraspecific_name": "strain=Lyon 8420412",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/12/15",
        "asm_name": "ASM146769v1",
        "asm_submitter": "Tel Aviv University",
        "gbrs_paired_asm": "GCA_001467695.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/467/695/GCF_001467695.1_ASM146769v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3926196",
        "genome_size_ungapped": "3924747",
        "gc_percent": "37.000000",
        "replicon_count": "0",
        "scaffold_count": "31",
        "contig_count": "31",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001467695.1-RS_2024_03_27",
        "annotation_date": "2024-03-27",
        "total_gene_count": "3486",
        "protein_coding_gene_count": "3374",
        "non_coding_gene_count": "43",
        "pubmed_id": "26752266"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-12-15",
    "dateModified": "2015-12-15",
    "datePublished": "2015-12-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Legionella gratiana"
        ],
        "sample_taxid": [
            "45066"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Savoy region"
        ],
        "sample_host_location_id": [],
        "data_size": "1.112 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3926196",
        "Number of Sequences": "31",
        "Longest Sequences (bp)": "876094",
        "N50 (bp)": "709402",
        "Gap Ratio (%)": "0.036906",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "3433",
        "Average Protein Length": "331.0",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Legionella gratiana",
                "strain": "strain=Lyon 8420412",
                "accession": "GCA_001467695.1",
                "taxid": 45066,
                "species_taxid": 45066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1294,
                "total_fragments": 1295,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella gratiana",
                "strain": "strain=Lyon 8420412",
                "accession": "GCA_900639855.1",
                "taxid": 45066,
                "species_taxid": 45066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9798,
                "matched_fragments": 1278,
                "total_fragments": 1295,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella gratiana",
                "strain": "strain=NCTC12388",
                "accession": "GCA_900452545.1",
                "taxid": 45066,
                "species_taxid": 45066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9784,
                "matched_fragments": 1292,
                "total_fragments": 1295,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella santicrucis",
                "strain": "strain=SC-63-C7",
                "accession": "GCA_001468135.1",
                "taxid": 45074,
                "species_taxid": 45074,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7146,
                "matched_fragments": 995,
                "total_fragments": 1295,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella santicrucis",
                "strain": "strain=SC-63-C7",
                "accession": "GCA_900639975.1",
                "taxid": 45074,
                "species_taxid": 45074,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6235,
                "matched_fragments": 999,
                "total_fragments": 1295,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella cincinnatiensis",
                "strain": "strain=CDC#72-OH-14",
                "accession": "GCA_001467545.1",
                "taxid": 28085,
                "species_taxid": 28085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3007,
                "matched_fragments": 985,
                "total_fragments": 1295,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella cincinnatiensis",
                "strain": "strain=NCTC12438",
                "accession": "GCA_900452415.1",
                "taxid": 28085,
                "species_taxid": 28085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2562,
                "matched_fragments": 993,
                "total_fragments": 1295,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella rowbothamii",
                "strain": "strain=LLAP6",
                "accession": "GCA_900639985.1",
                "taxid": 96229,
                "species_taxid": 96229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0073,
                "matched_fragments": 253,
                "total_fragments": 1295,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella gresilensis",
                "strain": "strain=Greoux 11D13",
                "accession": "GCA_900639865.1",
                "taxid": 91823,
                "species_taxid": 91823,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7141,
                "matched_fragments": 90,
                "total_fragments": 1295,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001467695.1",
                "gtdb_species": "s__Legionella gratiana",
                "ani": 100.0,
                "matched_fragments": 1294,
                "total_fragments": 1295,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001468135.1",
                "gtdb_species": "s__Legionella santicrucis",
                "ani": 86.7449,
                "matched_fragments": 992,
                "total_fragments": 1295,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900452415.1",
                "gtdb_species": "s__Legionella cincinnatiensis",
                "ani": 86.2519,
                "matched_fragments": 992,
                "total_fragments": 1295,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900637685.1",
                "gtdb_species": "s__Legionella sainthelensi",
                "ani": 84.4296,
                "matched_fragments": 927,
                "total_fragments": 1295,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.79",
                "min_intra_species_ani": "95.71",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_004283175.1",
                "gtdb_species": "s__Legionella longbeachae",
                "ani": 84.1282,
                "matched_fragments": 901,
                "total_fragments": 1295,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.77",
                "min_intra_species_ani": "99.22",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 9,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.324,
        "cell_length": 0.259,
        "doubling_h": 0.38,
        "growth_tmp": 37.0,
        "optimum_tmp": 33.77,
        "optimum_ph": 6.9,
        "genome_size": 3922768.0,
        "gc_content": 38.268,
        "coding_genes": 2803.262,
        "rRNA16S_genes": 3.5,
        "tRNA_genes": 42.766,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.888,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Legionella",
        "gratiana"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}