{ "type": "genome", "identifier": "GCF_001467765.1", "organism": "Legionella jordanis", "title": "Legionella jordanis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tel Aviv University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001467765.1", "bioproject": "PRJNA224116", "biosample": "SAMN04274780", "wgs_master": "LNYJ00000000.1", "refseq_category": "na", "taxid": "456", "species_taxid": "456", "organism_name": "Legionella jordanis", "infraspecific_name": "strain=BL-540", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/12/15", "asm_name": "ASM146776v1", "asm_submitter": "Tel Aviv University", "gbrs_paired_asm": "GCA_001467765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/467/765/GCF_001467765.1_ASM146776v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3086499", "genome_size_ungapped": "3086309", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001467765.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "2846", "protein_coding_gene_count": "2782", "non_coding_gene_count": "51", "pubmed_id": "26752266" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-12-15", "dateModified": "2015-12-15", "datePublished": "2015-12-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella jordanis" ], "sample_taxid": [ "456" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Bloomington, Indiana" ], "sample_host_location_id": [], "data_size": "0.878 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3086499", "Number of Sequences": "11", "Longest Sequences (bp)": "2700909", "N50 (bp)": "2700909", "Gap Ratio (%)": "0.006156", "GCcontent (%)": "41.7", "Number of CDSs": "2772", "Average Protein Length": "331.3", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella jordanis", "strain": "strain=BL-540", "accession": "GCA_001467765.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1023, "total_fragments": 1023, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella jordanis", "strain": "strain=ATCC 33623", "accession": "GCA_001648675.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 99.9777, "matched_fragments": 1012, "total_fragments": 1023, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella jordanis", "strain": "strain=NCTC11533", "accession": "GCA_900637635.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 99.9697, "matched_fragments": 1022, "total_fragments": 1023, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella hackeliae", "strain": "strain=ATCC35250", "accession": "GCA_000953655.1", "taxid": 449, "species_taxid": 449, "relation_to_type": "type", "validated": true, "ani": 79.154, "matched_fragments": 192, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella hackeliae", "strain": "strain=NCTC11979", "accession": "GCA_900452565.1", "taxid": 449, "species_taxid": 449, "relation_to_type": "type", "validated": true, "ani": 79.1075, "matched_fragments": 194, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=DSM 19215", "accession": "GCA_900114725.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 79.04, "matched_fragments": 193, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=JA-26-G1-E2", "accession": "GCA_900640205.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 78.916, "matched_fragments": 193, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella taurinensis", "strain": "strain=NCTC13314", "accession": "GCA_900452865.1", "taxid": 70611, "species_taxid": 70611, "relation_to_type": "type", "validated": true, "ani": 78.1892, "matched_fragments": 85, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella busanensis", "strain": "strain=NCTC13316", "accession": "GCA_900461525.1", "taxid": 190655, "species_taxid": 190655, "relation_to_type": "type", "validated": true, "ani": 77.7116, "matched_fragments": 73, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fluoribacter gormanii", "strain": "strain=NCTC11401", "accession": "GCA_900450965.1", "taxid": 464, "species_taxid": 464, "relation_to_type": "type", "validated": true, "ani": 77.68, "matched_fragments": 70, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=NCTC12376", "accession": "GCA_900452695.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 77.5732, "matched_fragments": 78, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=ATCC 49507", "accession": "GCA_001467955.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 77.4199, "matched_fragments": 79, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fluoribacter gormanii", "strain": "strain=ATCC 33342", "accession": "GCA_900156395.1", "taxid": 464, "species_taxid": 464, "relation_to_type": "type", "validated": true, "ani": 77.2297, "matched_fragments": 65, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900637635.1", "gtdb_species": "s__Tatlockia jordanis", "ani": 99.9697, "matched_fragments": 1022, "total_fragments": 1023, "gtdb_taxonomy": 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