{ "type": "genome", "identifier": "GCF_001467795.1", "organism": "Legionella lansingensis", "title": "Legionella lansingensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tel Aviv University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001467795.1", "bioproject": "PRJNA224116", "biosample": "SAMN04274781", "wgs_master": "LNYI00000000.1", "refseq_category": "na", "taxid": "45067", "species_taxid": "45067", "organism_name": "Legionella lansingensis", "infraspecific_name": "strain=ATCC 49751", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/12/15", "asm_name": "ASM146779v1", "asm_submitter": "Tel Aviv University", "gbrs_paired_asm": "GCA_001467795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/467/795/GCF_001467795.1_ASM146779v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2908590", "genome_size_ungapped": "2907875", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "77", "contig_count": "77", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001467795.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "2673", "protein_coding_gene_count": "2592", "non_coding_gene_count": "54", "pubmed_id": "26752266" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-12-15", "dateModified": "2015-12-15", "datePublished": "2015-12-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella lansingensis" ], "sample_taxid": [ "45067" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "legionellosis", "progressive, chronic lymphocytic leukemia, diabetes mellitus, recurrent pulmonary emboli, splenectomy" ], "sample_host_disease_id": [], "sample_host_location": [ "USA: Lansing, Michigan" ], "sample_host_location_id": [], "data_size": "0.835 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2908590", "Number of Sequences": "77", "Longest Sequences (bp)": "270502", "N50 (bp)": "73899", "Gap Ratio (%)": "0.024582", "GCcontent (%)": "40.7", "Number of CDSs": "2592", "Average Protein Length": "329.5", "Coding Ratio (%)": "88.1", "Number of rRNAs": "6", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella lansingensis", "strain": "strain=ATCC 49751", "accession": "GCA_001467795.1", "taxid": 45067, "species_taxid": 45067, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 934, "total_fragments": 935, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella lansingensis", "strain": "strain=ATCC 49751", "accession": "GCA_000622185.1", "taxid": 45067, "species_taxid": 45067, "relation_to_type": "type", "validated": true, "ani": 99.9862, "matched_fragments": 928, "total_fragments": 935, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella lansingensis", "strain": "strain=1677-MI-H", "accession": "GCA_900640195.1", "taxid": 45067, "species_taxid": 45067, "relation_to_type": "type", "validated": true, "ani": 99.9861, "matched_fragments": 922, "total_fragments": 935, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella lansingensis", "strain": "strain=NCTC12830", "accession": "GCA_900187355.1", "taxid": 45067, "species_taxid": 45067, "relation_to_type": "type", "validated": true, "ani": 99.9811, "matched_fragments": 934, "total_fragments": 935, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella clemsonensis", "strain": "strain=CDC-D5610", "accession": "GCA_002240035.1", "taxid": 1867846, "species_taxid": 1867846, "relation_to_type": "type", "validated": true, "ani": 78.1626, "matched_fragments": 205, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella brunensis", "strain": "strain=ATCC 43878", "accession": "GCA_001467025.1", "taxid": 29422, "species_taxid": 29422, "relation_to_type": "type", "validated": true, "ani": 78.1574, "matched_fragments": 287, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella hackeliae", "strain": "strain=ATCC35250", "accession": "GCA_000953655.1", "taxid": 449, "species_taxid": 449, "relation_to_type": "type", "validated": true, "ani": 77.8297, "matched_fragments": 227, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=DSM 19215", "accession": "GCA_900114725.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 77.6635, "matched_fragments": 209, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900187355.1", "gtdb_species": "s__Tatlockia lansingensis", "ani": 99.9811, "matched_fragments": 934, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_002240035.1", "gtdb_species": 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