{ "type": "genome", "identifier": "GCF_001467895.1", "organism": "Legionella nautarum", "title": "Legionella nautarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tel Aviv University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001467895.1", "bioproject": "PRJNA224116", "biosample": "SAMN04274786", "wgs_master": "LNYO00000000.1", "refseq_category": "reference genome", "taxid": "45070", "species_taxid": "45070", "organism_name": "Legionella nautarum", "infraspecific_name": "strain=ATCC 49506", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/12/15", "asm_name": "ASM146789v1", "asm_submitter": "Tel Aviv University", "gbrs_paired_asm": "GCA_001467895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/467/895/GCF_001467895.1_ASM146789v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3649429", "genome_size_ungapped": "3648126", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001467895.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "3216", "protein_coding_gene_count": "3125", "non_coding_gene_count": "41", "pubmed_id": "26752266" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-12-15", "dateModified": "2015-12-15", "datePublished": "2015-12-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella nautarum" ], "sample_taxid": [ "45070" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: London" ], "sample_host_location_id": [], "data_size": "1.039 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3649429", "Number of Sequences": "27", "Longest Sequences (bp)": "1295353", "N50 (bp)": "827231", "Gap Ratio (%)": "0.035704", "GCcontent (%)": "39.7", "Number of CDSs": "3166", "Average Protein Length": "338.8", "Coding Ratio (%)": "88.2", "Number of rRNAs": "3", "Number of tRNAs": "33", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella nautarum", "strain": "strain=ATCC 49506", "accession": "GCA_001467895.1", "taxid": 45070, "species_taxid": 45070, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1205, "total_fragments": 1206, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella nautarum", "strain": "strain=1224", "accession": "GCA_900639935.1", "taxid": 45070, "species_taxid": 45070, "relation_to_type": "type", "validated": true, "ani": 99.9752, "matched_fragments": 1178, "total_fragments": 1206, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella drozanskii", "strain": "strain=ATCC 700990", "accession": "GCA_001467585.1", "taxid": 96228, "species_taxid": 96228, "relation_to_type": "type", "validated": true, "ani": 86.5543, "matched_fragments": 907, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella drozanskii", "strain": "strain=LLAP-1", "accession": "GCA_900640075.1", "taxid": 96228, "species_taxid": 96228, "relation_to_type": "type", "validated": true, "ani": 86.5375, "matched_fragments": 903, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella maceachernii", 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