{ "type": "genome", "identifier": "GCF_001468165.1", "organism": "Legionella spiritensis", "title": "Legionella spiritensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tel Aviv University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001468165.1", "bioproject": "PRJNA224116", "biosample": "SAMN04274795", "wgs_master": "LNYX00000000.1", "refseq_category": "na", "taxid": "452", "species_taxid": "452", "organism_name": "Legionella spiritensis", "infraspecific_name": "strain=Mt.St.Helens-9", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/12/15", "asm_name": "ASM146816v1", "asm_submitter": "Tel Aviv University", "gbrs_paired_asm": "GCA_001468165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/468/165/GCF_001468165.1_ASM146816v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3313534", "genome_size_ungapped": "3312138", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001468165.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "2960", "protein_coding_gene_count": "2879", "non_coding_gene_count": "49", "pubmed_id": "26752266" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-12-15", "dateModified": "2015-12-15", "datePublished": "2015-12-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella spiritensis" ], "sample_taxid": [ "452" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Spirit Lake, Washington" ], "sample_host_location_id": [], "data_size": "0.944 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3313534", "Number of Sequences": "35", "Longest Sequences (bp)": "559478", "N50 (bp)": "301316", "Gap Ratio (%)": "0.042130", "GCcontent (%)": "45.4", "Number of CDSs": "2908", "Average Protein Length": "335.0", "Coding Ratio (%)": "88.2", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella spiritensis", "strain": "strain=Mt.St.Helens-9", "accession": "GCA_001468165.1", "taxid": 452, "species_taxid": 452, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1086, "total_fragments": 1087, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella spiritensis", "strain": "strain=NCTC11990", "accession": "GCA_900186965.1", "taxid": 452, "species_taxid": 452, "relation_to_type": "type", "validated": true, "ani": 99.9697, "matched_fragments": 1085, "total_fragments": 1087, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella brunensis", "strain": "strain=ATCC 43878", "accession": "GCA_001467025.1", "taxid": 29422, "species_taxid": 29422, "relation_to_type": "type", "validated": true, "ani": 80.3615, "matched_fragments": 81, "total_fragments": 1087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella brunensis", "strain": "strain=441-1", "accession": "GCA_900639795.1", "taxid": 29422, "species_taxid": 29422, "relation_to_type": "type", "validated": true, "ani": 80.3009, "matched_fragments": 77, "total_fragments": 1087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella fairfieldensis", "strain": "strain=1725-Aus-E", "accession": "GCA_900640125.1", "taxid": 45064, "species_taxid": 45064, "relation_to_type": "type", "validated": true, "ani": 79.3297, "matched_fragments": 80, "total_fragments": 1087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella fairfieldensis", "strain": "strain=ATCC 49588", "accession": "GCA_000621525.1", "taxid": 45064, "species_taxid": 45064, "relation_to_type": "type", "validated": true, "ani": 79.2236, "matched_fragments": 82, "total_fragments": 1087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella israelensis", "strain": "strain=NCTC12010", "accession": "GCA_900452605.1", "taxid": 454, "species_taxid": 454, "relation_to_type": "type", "validated": true, "ani": 78.6659, "matched_fragments": 91, "total_fragments": 1087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jordanis", "strain": "strain=BL-540", "accession": "GCA_001467765.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 77.9182, "matched_fragments": 80, "total_fragments": 1087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jordanis", "strain": "strain=NCTC11533", "accession": "GCA_900637635.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 77.8985, "matched_fragments": 83, "total_fragments": 1087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella erythra", "strain": "strain=SE-32A-C8", "accession": "GCA_001467615.1", "taxid": 448, "species_taxid": 448, "relation_to_type": "type", "validated": true, "ani": 77.6263, "matched_fragments": 164, "total_fragments": 1087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella taurinensis", "strain": "strain=NCTC13314", "accession": "GCA_900452865.1", "taxid": 70611, "species_taxid": 70611, "relation_to_type": 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"mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000621525.1", "gtdb_species": "s__Tatlockia fairfieldensis", "ani": 79.2236, "matched_fragments": 82, "total_fragments": 1087, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001468125.1", "gtdb_species": "s__Legionella_C rubrilucens", "ani": 79.0944, "matched_fragments": 140, "total_fragments": 1087, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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